RNA id: TU597650


Basic Information

Item Value
RNA id TU597650
length 500
lncRNA type inter_gene
GC content 0.53
exon number 1
gene id G527447
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 58776683 ~ 58777182 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cgctcaatgcgaatagcgagttcaatcaaggaatccacgctggaaggaacctcccgggagagaatctcatcctttacctctgcgcggagaccctccagaaaacgagcgagcaaagccggctcgttccagccactggaggcagcaagagtgcgaaactcaatagagtagtctgttatggatcgattaccttgacatagggaagacagaaccctggaagcctcctccccaaaaacagatcgatcaaaaacccgtatcatctcctccttaaagtcctgatactggttagtacactcagcccttgcctcccagattgccgtgccccactcacgagcccgtccaataaggagagatatgacgtaggcgacacgagcagtgctcctggagtaagtgttgggctggagagaaaacacaatatcacactgggtgaggaacgagcggcattcagtgggctccccagagtaacacggcgggttattgattctgggctccggagattcgaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU597649 lncRNA upstream 1189 58775258 ~ 58775494 (+) True G527446
TU597647 lncRNA upstream 3053 58773352 ~ 58773630 (+) True G527444
TU597596 lncRNA upstream 35878 58740500 ~ 58740805 (+) True G527393
TU597339 lncRNA upstream 176564 58597812 ~ 58600119 (+) True G527157
TU597294 lncRNA upstream 194799 58528121 ~ 58581884 (+) True G527113
TU597654 lncRNA downstream 2187 58779369 ~ 58779600 (+) True G527451
TU597655 lncRNA downstream 3402 58780584 ~ 58783386 (+) True G527452
TU597758 lncRNA downstream 119681 58896863 ~ 58904473 (+) True G527550
TU597797 lncRNA downstream 206215 58983397 ~ 58984068 (+) True G527589
TU597802 lncRNA downstream 218192 58995374 ~ 58995705 (+) True G527594
XM_036980607.1 mRNA upstream 43993 58640655 ~ 58732690 (+) False LOC110526245
XM_036980608.1 mRNA upstream 43993 58640655 ~ 58732690 (+) False LOC110526245
XM_036980605.1 mRNA upstream 43993 58652255 ~ 58732690 (+) True LOC110526245
XM_036980604.1 mRNA upstream 49299 58640655 ~ 58727384 (+) False LOC110526245
XM_036980609.1 mRNA downstream 37301 58814483 ~ 59000538 (+) True LOC110526935
XM_036980612.1 mRNA downstream 565937 59343119 ~ 59376681 (+) True tshz3b
LOC118965037 mRNA downstream 1066446 59843628 ~ 59847586 (+) True LOC118965037
XM_021607061.2 mRNA downstream 1073980 59851162 ~ 59861646 (+) True LOC110526256
XM_036980620.1 mRNA downstream 1390323 60167505 ~ 60175549 (+) True LOC110526261
TU596824 other upstream 404715 58318920 ~ 58371968 (+) True LOC110526933
TU596784 other upstream 503847 58272079 ~ 58272836 (+) True G526628
TU596687 other upstream 663864 58110906 ~ 58112819 (+) True G526547
TU596076 other upstream 958403 57817824 ~ 57818280 (+) True G525972
TU596007 other upstream 1066343 57703458 ~ 57710340 (+) True G525912
TU597653 other downstream 1541 58778723 ~ 58779017 (+) True G527450
TU598912 other downstream 994526 59771708 ~ 59772084 (+) True G528653
TU601664 other downstream 3194554 61971736 ~ 61979527 (+) True LOC110526282
TU601786 other downstream 3372591 62149773 ~ 62152218 (+) True G531406
TU602760 other downstream 4043238 62820420 ~ 62822616 (+) True G532259

Expression Profile