RNA id: TU597653


Basic Information

Item Value
RNA id TU597653
length 295
RNA type TUCP
GC content 0.52
exon number 1
gene id G527450
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 58778723 ~ 58779017 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgaggctaggtaacacggtcaccaccgataaatccatgattatcgaaaacttcaataagcatttctcaacggctggccatgccttccgcctggctacttcaacctcggccaacagccccgccccccccgctgctcctcgcccaagcctctccaggttatcctttacccaaatccagatagcagatgttctgaaagagctgcaaaacctggacccgtacaaatcagctgggcttgacaatctggaccctctatttctgaaactatccgcctccattgtcgcaacccctattaccag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU597650 lncRNA upstream 1541 58776683 ~ 58777182 (+) True G527447
TU597649 lncRNA upstream 3229 58775258 ~ 58775494 (+) True G527446
TU597647 lncRNA upstream 5093 58773352 ~ 58773630 (+) True G527444
TU597596 lncRNA upstream 37918 58740500 ~ 58740805 (+) True G527393
TU597339 lncRNA upstream 178604 58597812 ~ 58600119 (+) True G527157
TU597654 lncRNA downstream 352 58779369 ~ 58779600 (+) True G527451
TU597655 lncRNA downstream 1567 58780584 ~ 58783386 (+) True G527452
TU597758 lncRNA downstream 117846 58896863 ~ 58904473 (+) True G527550
TU597797 lncRNA downstream 204380 58983397 ~ 58984068 (+) True G527589
TU597802 lncRNA downstream 216357 58995374 ~ 58995705 (+) True G527594
XM_036980598.1 mRNA upstream 46033 58640654 ~ 58732690 (+) False LOC110526245
XM_036980599.1 mRNA upstream 46033 58640654 ~ 58732690 (+) False LOC110526245
XM_036980601.1 mRNA upstream 46033 58640654 ~ 58732690 (+) False LOC110526245
XM_036980602.1 mRNA upstream 46033 58640654 ~ 58732690 (+) False LOC110526245
XM_036980603.1 mRNA upstream 46033 58640654 ~ 58732690 (+) False LOC110526245
XM_036980609.1 mRNA downstream 35466 58814483 ~ 59000538 (+) True LOC110526935
XM_036980612.1 mRNA downstream 564102 59343119 ~ 59376681 (+) True tshz3b
LOC118965037 mRNA downstream 1064611 59843628 ~ 59847586 (+) True LOC118965037
XM_021607061.2 mRNA downstream 1072145 59851162 ~ 59861646 (+) True LOC110526256
XM_036980620.1 mRNA downstream 1388488 60167505 ~ 60175549 (+) True LOC110526261
TU596824 other upstream 406755 58318920 ~ 58371968 (+) True LOC110526933
TU596784 other upstream 505887 58272079 ~ 58272836 (+) True G526628
TU596687 other upstream 665904 58110906 ~ 58112819 (+) True G526547
TU596076 other upstream 960443 57817824 ~ 57818280 (+) True G525972
TU596007 other upstream 1068383 57703458 ~ 57710340 (+) True G525912
TU598912 other downstream 992691 59771708 ~ 59772084 (+) True G528653
TU601664 other downstream 3192719 61971736 ~ 61979527 (+) True LOC110526282
TU601786 other downstream 3370756 62149773 ~ 62152218 (+) True G531406
TU602760 other downstream 4041403 62820420 ~ 62822616 (+) True G532259
TU602899 other downstream 4233241 63012258 ~ 63014986 (+) False LOC110526311

Expression Profile