RNA id: TU598122


Basic Information

Item Value
RNA id TU598122
length 208
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G527885
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 59147934 ~ 59148141 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgtttggaggatatatgtataacaacacctgtgccaatttatcctccaaacactggcttctttGGAATTATCACTTTAGTATTCCCTTGTGTTAGAATTTTTTCTAGGATGTTTCTATTTTTCtccctgcattgttgggaagcacctgtaagttaacatttcactgctagtcgacacctgttgttttacgaagcatatgacaaatac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU597808 lncRNA upstream 138629 59008252 ~ 59009305 (+) True G527599
TU597802 lncRNA upstream 152229 58995374 ~ 58995705 (+) True G527594
TU597797 lncRNA upstream 163866 58983397 ~ 58984068 (+) True G527589
TU597758 lncRNA upstream 243461 58896863 ~ 58904473 (+) True G527550
TU597655 lncRNA upstream 364548 58780584 ~ 58783386 (+) True G527452
TU598200 lncRNA downstream 55271 59203412 ~ 59203664 (+) True G527963
TU598229 lncRNA downstream 90172 59238313 ~ 59241544 (+) True G527992
TU598466 lncRNA downstream 263320 59411461 ~ 59411665 (+) True G528215
TU598516 lncRNA downstream 308336 59456477 ~ 59456973 (+) True G528265
TU598525 lncRNA downstream 312937 59461078 ~ 59461291 (+) True G528274
XM_036980609.1 mRNA upstream 147396 58814483 ~ 59000538 (+) True LOC110526935
XM_036980607.1 mRNA upstream 415244 58640655 ~ 58732690 (+) False LOC110526245
XM_036980608.1 mRNA upstream 415244 58640655 ~ 58732690 (+) False LOC110526245
XM_036980605.1 mRNA upstream 415244 58652255 ~ 58732690 (+) True LOC110526245
XM_036980606.1 mRNA upstream 420550 58640655 ~ 58727384 (+) False LOC110526245
XM_036980612.1 mRNA downstream 194978 59343119 ~ 59376681 (+) True tshz3b
LOC118965037 mRNA downstream 695487 59843628 ~ 59847586 (+) True LOC118965037
XM_021607061.2 mRNA downstream 703021 59851162 ~ 59861646 (+) True LOC110526256
XM_036980620.1 mRNA downstream 1019364 60167505 ~ 60175549 (+) True LOC110526261
XM_021607074.2 mRNA downstream 1282060 60430201 ~ 60432307 (+) True LOC100653452
TU597653 other upstream 368917 58778723 ~ 58779017 (+) True G527450
TU596824 other upstream 775966 58318920 ~ 58371968 (+) True LOC110526933
TU596784 other upstream 875098 58272079 ~ 58272836 (+) True G526628
TU596687 other upstream 1035115 58110906 ~ 58112819 (+) True G526547
TU596076 other upstream 1329654 57817824 ~ 57818280 (+) True G525972
TU598912 other downstream 623567 59771708 ~ 59772084 (+) True G528653
TU601664 other downstream 2823595 61971736 ~ 61979527 (+) True LOC110526282
TU601786 other downstream 3001632 62149773 ~ 62152218 (+) True G531406
TU602760 other downstream 3672279 62820420 ~ 62822616 (+) True G532259
TU602899 other downstream 3864117 63012258 ~ 63014986 (+) False LOC110526311

Expression Profile