RNA id: TU598229


Basic Information

Item Value
RNA id TU598229
length 298
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G527992
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 59238313 ~ 59241544 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgtagattgcgatccatgttttaatgaacaaacgtaaaaacacgaatcaatgcaaacactacaaaataaagaacgtgatgaacgtaacgaaaacctaaaacagcctatctggtgaaaaacacatagacaggaacaatcacccacaaacacacagtgaaacccaggctacctaaatatggttcccaatcagagacaatgacaaacacctgcctctgattgagaaccatatcaggccgaacatagaactagacaaactagacatgtaacatagaatgcccactcagatcacaccctgac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU598200 lncRNA upstream 34649 59203412 ~ 59203664 (+) True G527963
TU598122 lncRNA upstream 90172 59147934 ~ 59148141 (+) True G527885
TU597808 lncRNA upstream 229008 59008252 ~ 59009305 (+) True G527599
TU597802 lncRNA upstream 242608 58995374 ~ 58995705 (+) True G527594
TU597797 lncRNA upstream 254245 58983397 ~ 58984068 (+) True G527589
TU598466 lncRNA downstream 169917 59411461 ~ 59411665 (+) True G528215
TU598516 lncRNA downstream 214933 59456477 ~ 59456973 (+) True G528265
TU598525 lncRNA downstream 219534 59461078 ~ 59461291 (+) True G528274
TU598573 lncRNA downstream 286814 59528358 ~ 59530867 (+) True G528321
TU598589 lncRNA downstream 309460 59551004 ~ 59553757 (+) True G528337
XM_036980609.1 mRNA upstream 237775 58814483 ~ 59000538 (+) True LOC110526935
XM_036980607.1 mRNA upstream 505623 58640655 ~ 58732690 (+) False LOC110526245
XM_036980608.1 mRNA upstream 505623 58640655 ~ 58732690 (+) False LOC110526245
XM_036980605.1 mRNA upstream 505623 58652255 ~ 58732690 (+) True LOC110526245
XM_036980606.1 mRNA upstream 510929 58640655 ~ 58727384 (+) False LOC110526245
XM_036980612.1 mRNA downstream 101575 59343119 ~ 59376681 (+) True tshz3b
LOC118965037 mRNA downstream 602084 59843628 ~ 59847586 (+) True LOC118965037
XM_021607061.2 mRNA downstream 609618 59851162 ~ 59861646 (+) True LOC110526256
XM_036980620.1 mRNA downstream 925961 60167505 ~ 60175549 (+) True LOC110526261
XM_021607074.2 mRNA downstream 1188657 60430201 ~ 60432307 (+) True LOC100653452
TU597653 other upstream 459296 58778723 ~ 58779017 (+) True G527450
TU596824 other upstream 866345 58318920 ~ 58371968 (+) True LOC110526933
TU596784 other upstream 965477 58272079 ~ 58272836 (+) True G526628
TU596687 other upstream 1125494 58110906 ~ 58112819 (+) True G526547
TU596076 other upstream 1420033 57817824 ~ 57818280 (+) True G525972
TU598912 other downstream 530164 59771708 ~ 59772084 (+) True G528653
TU601664 other downstream 2730192 61971736 ~ 61979527 (+) True LOC110526282
TU601786 other downstream 2908229 62149773 ~ 62152218 (+) True G531406
TU602760 other downstream 3578876 62820420 ~ 62822616 (+) True G532259
TU602899 other downstream 3770714 63012258 ~ 63014986 (+) False LOC110526311

Expression Profile