RNA id: TU598573


Basic Information

Item Value
RNA id TU598573
length 2471
lncRNA type antisense_over
GC content 0.42
exon number 2
gene id G528321
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 59528358 ~ 59530867 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTAGTTACAAAACGAAGCATCTGCCATGAGAATACAGCAAACAAAAGGTTTTCAGCTCACAAGACAGGTTCGTACGTGGAATGCTCATATACCGGTTCAGAGAGAGCCAGACAGTTAATATTAACCTCTCAGCTATACAACCACACaacggagagaaggggagagagggcgTCACTATGGGACTGACCGGGCCCTCTGATTGGTTAACTCAGACCCAGTCCCACAATCCACTTCTCAGCACCCTGTTTAATTCCCAACAATACCACTTTTTGTTTTATATTTCTCGTCCTTTTTTCTCCTCCTTCATATTTTGGAATTGGGAATTCTAAAGTCAAGAAAAGCAaattaaaaacagttttttttttgtgtgtgtgtggagttgaATTTCAACCCGATGTGGAACTTGAGCATTGATCATCACTCTGCTTTAGAGTAACAACCAGCATGTAAATGATGACCACACAGGTGACTTGCATGCCTTGGGTTGGCACTATGATAACAGTTTTGTCAAAGCCATGTACTGTGGTCCTTCAAACtgaaaatgtactgtatatatatatgtgcacTGTACATACCGCATTAGAATTCTCAGGGTTCACAAGAGGACATAGAAACATTTCACAATGTcaagggacacacagacacacacacacacacaccttcattgTAGTTAGTGAGCTAGTTTTGTACTGTATAGATTTTGATTTATAATACTAATCACAGCGCAAAATACTTTTGGGAGAAAAAACAAATCCTTCTATGCATAATGTATTATGTATATAAGGGCATATGTTTGGAGCACATGAGTAGATTGTCaatctttttcttttttctttgaaatgtaagaaggcaaaaaaaaaagtacaGTACTTGGAAGAAAAGGAAAACGGATCGACCCTAAGGCCTACCGTCTAAAACAACTAGCTTCGTGGATGCAACAACGGATGACTGTATCTAAGGCTAGACAATATTTGTTTTTTccagttttttcttcttcttcttcttcttcttctttttttttaaagtaaatacaTCAAACCGTTTCAGTAGTCAGTAACACTTTGCAACATTGATCGGTGGCAGTATCTTACAAACATTTGCAACACTACAGTCCTCGAAGTCAATAAGAGAGATGAAAAGGGGAGAAAATACAATCCCGTTTTGTTTTTCATATCTTCTCTTCAAGCTCTATGTTTACCTACAGGACAAGGTCGTGTAAACTAGTCATCACTGTCACTTCAACACCTTCTGCTCTTCACAAacagcgtttttttttttttttgttttttgttgttgctactTCTCTCTTTTTACATTTAGTTCTGAGCATTTACAGGCTCTGTGATATAGAGTGAGAAGAGTCTTCCCTTCTGTCCTGTTCCTGTTACggggagggggtggggtgaggaTCCTCAGTCCTCTGTCCATCGTCACACTTTACTGTACAATGCTCGGGCTTTCTCTCCTCGTTGTCACATCTACTAACATCCCAATCATATCTGAAAACTACTGCTCTCTCTTAGTTAGCTAGCACAGGAAAAGATTGTCAGAGAATGTCATACTTCTGGTttagtttttagtttttcagtttttCTTCTCCCTGTTAGTTTGTTTTTGACACGCAGAGCATTGTGCCCTAAAACAGGGTAGAAAACAGCAACTAAAATGTGCGTGGCAATAAGTGTGCTTGGTCTCCATAGATGGTTGGTCTGGTCAAAAGGAGCTTGTTAAGCTACAGCTCCAGCTGGACAAGAGTGGGAATGGTACAGTCCAGGGACAATACCATTACTGTGATCCAGGGGTCACTGAATACCTGTCTTGTACTGGAtctgataggagagagagagagagagagtctgtcgtACAGGTGAAGCACAGGTCAGCACAACAGTTCAGTCTGAATATTATCTgctttttttttgtcaacaatgatGGACGCCATCTTGGATCAAGGAATGTGTCATAGTAGGGGTGTTTTAGGGACTGTCATTTAGCAGGTAGTTTCAGCAAAAACATCAAAAGGAGAGACATGAAGAAGacagaagatggagggaggagtcaTCCATGAGAGGACAGGAAACAGAATGGTTAaagtcgctgtctgtctgtcactttgCTGAGCGTCACATCCAGTGGCCTCTACAAGTCATTTCAgcaggtctgtctctgtctcctctccatcctcacaCAGGGCAGAAACACTCCTTCATAGTTCCTTTTGAATGACTTCTCTTGTTTGATTGTAGCATGTTTTAAATCAACGTCGTTGATATAGTGTGTTccttcatcatcaccatcatcatcatgttcCTGCCTTGCTCCAGCCGGGTGCTCGGGCGGGAGTTAGTCTCTGTTAAGAGAGGCTGCGTCGTGCGTCTCAGTGTCAGCTAGGTTAGGCAGCGCGAGGTTAGGGTCGAGGGTCAGCGCGGGGCCCAGGGCTCCAtggccttcctcctctcctacccACAGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU598525 lncRNA upstream 67067 59461078 ~ 59461291 (+) True G528274
TU598516 lncRNA upstream 71385 59456477 ~ 59456973 (+) True G528265
TU598466 lncRNA upstream 116693 59411461 ~ 59411665 (+) True G528215
TU598229 lncRNA upstream 286814 59238313 ~ 59241544 (+) True G527992
TU598200 lncRNA upstream 324694 59203412 ~ 59203664 (+) True G527963
TU598589 lncRNA downstream 20137 59551004 ~ 59553757 (+) True G528337
TU598903 lncRNA downstream 236295 59767162 ~ 59767517 (+) True G528644
TU598922 lncRNA downstream 247388 59778255 ~ 59778497 (+) True G528663
TU598924 lncRNA downstream 248362 59779229 ~ 59779452 (+) True G528665
TU598932 lncRNA downstream 254482 59785349 ~ 59785558 (+) True G528673
XM_036980612.1 mRNA upstream 151677 59343119 ~ 59376681 (+) True tshz3b
XM_036980609.1 mRNA upstream 527820 58814483 ~ 59000538 (+) True LOC110526935
XM_036980607.1 mRNA upstream 795668 58640655 ~ 58732690 (+) False LOC110526245
LOC118965037 mRNA downstream 312761 59843628 ~ 59847586 (+) True LOC118965037
XM_021607061.2 mRNA downstream 320295 59851162 ~ 59861646 (+) True LOC110526256
XM_036980620.1 mRNA downstream 636638 60167505 ~ 60175549 (+) True LOC110526261
XM_021607074.2 mRNA downstream 899334 60430201 ~ 60432307 (+) True LOC100653452
XR_005052179.1 mRNA downstream 917739 60448606 ~ 60452270 (+) False LOC110526265
TU597653 other upstream 749341 58778723 ~ 58779017 (+) True G527450
TU596824 other upstream 1156390 58318920 ~ 58371968 (+) True LOC110526933
TU596784 other upstream 1255522 58272079 ~ 58272836 (+) True G526628
TU596687 other upstream 1415539 58110906 ~ 58112819 (+) True G526547
TU596076 other upstream 1710078 57817824 ~ 57818280 (+) True G525972
TU598912 other downstream 240841 59771708 ~ 59772084 (+) True G528653
TU601664 other downstream 2440869 61971736 ~ 61979527 (+) True LOC110526282
TU601786 other downstream 2618906 62149773 ~ 62152218 (+) True G531406
TU602760 other downstream 3289553 62820420 ~ 62822616 (+) True G532259
TU602899 other downstream 3481391 63012258 ~ 63014986 (+) False LOC110526311

Expression Profile