RNA id: TU598903


Basic Information

Item Value
RNA id TU598903
length 356
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G528644
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 59767162 ~ 59767517 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gctgtgtaagggctatttgaacaagaaggaaagtgatggagtgctgcatcagatgacctggcctccaaaatcacctgatctcaacccaattgagatggtttgggatgagttggaccacagagtgaaggaaaagcaaccaacaagtgctcagcatatgtgggaactccttcaagactgttggaaaagcattcttcatgaagctagttgagagaatgccaagagtgtgcaaagctgttatcaaggcaaagggtggctactttgaagaaatatattttgatttgtttaacacgcttttggttactacatgattccatatgttatttcatagttttgatgtcttcactgttattctacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU598589 lncRNA upstream 213405 59551004 ~ 59553757 (+) True G528337
TU598573 lncRNA upstream 236295 59528358 ~ 59530867 (+) True G528321
TU598525 lncRNA upstream 305871 59461078 ~ 59461291 (+) True G528274
TU598516 lncRNA upstream 310189 59456477 ~ 59456973 (+) True G528265
TU598466 lncRNA upstream 355497 59411461 ~ 59411665 (+) True G528215
TU598922 lncRNA downstream 10738 59778255 ~ 59778497 (+) True G528663
TU598924 lncRNA downstream 11712 59779229 ~ 59779452 (+) True G528665
TU598932 lncRNA downstream 17832 59785349 ~ 59785558 (+) True G528673
TU598964 lncRNA downstream 38421 59805938 ~ 59806738 (+) True G528705
TU598990 lncRNA downstream 75063 59842580 ~ 59844196 (+) True G528728
XM_036980612.1 mRNA upstream 390481 59343119 ~ 59376681 (+) True tshz3b
XM_036980609.1 mRNA upstream 766624 58814483 ~ 59000538 (+) True LOC110526935
XM_036980607.1 mRNA upstream 1034472 58640655 ~ 58732690 (+) False LOC110526245
LOC118965037 mRNA downstream 76111 59843628 ~ 59847586 (+) True LOC118965037
XM_021607061.2 mRNA downstream 83645 59851162 ~ 59861646 (+) True LOC110526256
XM_036980620.1 mRNA downstream 399988 60167505 ~ 60175549 (+) True LOC110526261
XM_021607074.2 mRNA downstream 662684 60430201 ~ 60432307 (+) True LOC100653452
XR_005052179.1 mRNA downstream 681089 60448606 ~ 60452270 (+) False LOC110526265
TU597653 other upstream 988145 58778723 ~ 58779017 (+) True G527450
TU596824 other upstream 1395194 58318920 ~ 58371968 (+) True LOC110526933
TU596784 other upstream 1494326 58272079 ~ 58272836 (+) True G526628
TU596687 other upstream 1654343 58110906 ~ 58112819 (+) True G526547
TU596076 other upstream 1948882 57817824 ~ 57818280 (+) True G525972
TU598912 other downstream 4191 59771708 ~ 59772084 (+) True G528653
TU601664 other downstream 2204219 61971736 ~ 61979527 (+) True LOC110526282
TU601786 other downstream 2382256 62149773 ~ 62152218 (+) True G531406
TU602760 other downstream 3052903 62820420 ~ 62822616 (+) True G532259
TU602899 other downstream 3244741 63012258 ~ 63014986 (+) False LOC110526311

Expression Profile