RNA id: TU598912


Basic Information

Item Value
RNA id TU598912
length 377
RNA type TUCP
GC content 0.45
exon number 1
gene id G528653
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 59771708 ~ 59772084 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctccgtataaatgcacctgcactgtgatagtctcagaggtccgttaaaagcgcagagagcatcatgaagaacaaggaacacaccaggcaggtccgagatactgttgtgaagaagtttaaagccggatttggatacaaaaagatttcccaagctttaaacatcccaaggagcactgtgcaagctataatattgaaatggaaggagtatcagaccactgcaaatctaccaagacctggccgtccctctaaactttcagctcatacaaggagaagactgatcagagatgcagccaagaggcccatgatcactatggatgaactgcagagatctacagctgaggtgggagactctgtccataggacaacaatcagttgtat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU598903 lncRNA upstream 4191 59767162 ~ 59767517 (+) True G528644
TU598589 lncRNA upstream 217951 59551004 ~ 59553757 (+) True G528337
TU598573 lncRNA upstream 240841 59528358 ~ 59530867 (+) True G528321
TU598525 lncRNA upstream 310417 59461078 ~ 59461291 (+) True G528274
TU598516 lncRNA upstream 314735 59456477 ~ 59456973 (+) True G528265
TU598922 lncRNA downstream 6171 59778255 ~ 59778497 (+) True G528663
TU598924 lncRNA downstream 7145 59779229 ~ 59779452 (+) True G528665
TU598932 lncRNA downstream 13265 59785349 ~ 59785558 (+) True G528673
TU598964 lncRNA downstream 33854 59805938 ~ 59806738 (+) True G528705
TU598990 lncRNA downstream 70496 59842580 ~ 59844196 (+) True G528728
XM_036980612.1 mRNA upstream 395027 59343119 ~ 59376681 (+) True tshz3b
XM_036980609.1 mRNA upstream 771170 58814483 ~ 59000538 (+) True LOC110526935
XM_036980607.1 mRNA upstream 1039018 58640655 ~ 58732690 (+) False LOC110526245
XM_036980608.1 mRNA upstream 1039018 58640655 ~ 58732690 (+) False LOC110526245
XM_036980605.1 mRNA upstream 1039018 58652255 ~ 58732690 (+) True LOC110526245
LOC118965037 mRNA downstream 71544 59843628 ~ 59847586 (+) True LOC118965037
XM_021607061.2 mRNA downstream 79078 59851162 ~ 59861646 (+) True LOC110526256
XM_036980620.1 mRNA downstream 395421 60167505 ~ 60175549 (+) True LOC110526261
XM_021607074.2 mRNA downstream 658117 60430201 ~ 60432307 (+) True LOC100653452
XR_005052179.1 mRNA downstream 676522 60448606 ~ 60452270 (+) False LOC110526265
TU597653 other upstream 992691 58778723 ~ 58779017 (+) True G527450
TU596824 other upstream 1399740 58318920 ~ 58371968 (+) True LOC110526933
TU596784 other upstream 1498872 58272079 ~ 58272836 (+) True G526628
TU596687 other upstream 1658889 58110906 ~ 58112819 (+) True G526547
TU596076 other upstream 1953428 57817824 ~ 57818280 (+) True G525972
TU601664 other downstream 2199652 61971736 ~ 61979527 (+) True LOC110526282
TU601786 other downstream 2377689 62149773 ~ 62152218 (+) True G531406
TU602760 other downstream 3048336 62820420 ~ 62822616 (+) True G532259
TU602899 other downstream 3240174 63012258 ~ 63014986 (+) False LOC110526311
TU602734 other downstream 3260847 63032931 ~ 63198734 (+) False G532237

Expression Profile