RNA id: TU598990



Basic Information


Item Value
RNA id TU598990
length 582
lncRNA type read_through
GC content 0.47
exon number 5
gene id G528728
representative True

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 59842580 ~ 59844196 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ACTGCATCTTGCCCATGTTGTCCCAGGTACCAGAAGTGACTCACCATAGCACAGGAAGAGGGGAAGACCTGGTGGGTGTGACAAATATGTTTTTGAAGGTGTACCGAGCGGAAAAGCCAGTGGTATTCAAGGCAACTGGTTGAGCGACTTCATTGTCAGGCGCGGGGATCCGCCTGCACGGGCTTGTGAAAACCGACTCAGGATTCCAGCACACCGGAGTTCCACACTGTTTCTTTTTGATCATCTCTGCCACTTCATCTGGGTCTTGCAAATAAATGGCAACGTCTGCTTTTCTTTTCCTGGATCTCACTGTAGTTTCCTTGGGCATCTCATGATCAATAGACCTGGATTCCACATTTGTCCCCTTTCTTAGCATTATAGCCCACGTGTATCACTCCAATAGAGAACCTAAAAGTATTCCCCTGCGAAGAAGTCCACACTTGGCTGAAAGGATCAGACAAAATATAGCTACGgttactagctagctatttcaatTATTGTTCGATTCGTGGCCTCTGTCATCAAAAGGGAGCTGTGAACTTTGCTAGCTACTTGTTCTTCGCTAGTGCGGTGAGTTTTGCG

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU598964 lncRNA upstream 35842 59805938 ~ 59806738 (+) True G528705
TU598932 lncRNA upstream 57022 59785349 ~ 59785558 (+) True G528673
TU598924 lncRNA upstream 63128 59779229 ~ 59779452 (+) True G528665
TU598922 lncRNA upstream 64083 59778255 ~ 59778497 (+) True G528663
TU598903 lncRNA upstream 75063 59767162 ~ 59767517 (+) True G528644
TU599069 lncRNA downstream 52597 59896793 ~ 59900613 (+) True G528802
TU599258 lncRNA downstream 189876 60034072 ~ 60034297 (+) True G528986
TU599325 lncRNA downstream 235973 60080169 ~ 60080372 (+) True G529052
TU599793 lncRNA downstream 561441 60405637 ~ 60405856 (+) True G529500
TU599795 lncRNA downstream 562026 60406222 ~ 60406430 (+) True G529502
XM_036980612.1 mRNA upstream 465899 59343119 ~ 59376681 (+) True tshz3b
XM_036980609.1 mRNA upstream 842042 58814483 ~ 59000538 (+) True LOC110526935
XM_036980607.1 mRNA upstream 1109890 58640655 ~ 58732690 (+) False LOC110526245
XM_021607061.2 mRNA downstream 6966 59851162 ~ 59861646 (+) True LOC110526256
XM_036980620.1 mRNA downstream 323309 60167505 ~ 60175549 (+) True LOC110526261
XM_021607074.2 mRNA downstream 586005 60430201 ~ 60432307 (+) True LOC100653452
XR_005052179.1 mRNA downstream 604410 60448606 ~ 60452270 (+) False LOC110526265
XR_005052180.1 mRNA downstream 604410 60448606 ~ 60452270 (+) False LOC110526265
TU598912 other upstream 70496 59771708 ~ 59772084 (+) True G528653
TU597653 other upstream 1063563 58778723 ~ 58779017 (+) True G527450
TU596824 other upstream 1470612 58318920 ~ 58371968 (+) True LOC110526933
TU596784 other upstream 1569744 58272079 ~ 58272836 (+) True G526628
TU596687 other upstream 1729761 58110906 ~ 58112819 (+) True G526547
TU601664 other downstream 2127540 61971736 ~ 61979527 (+) True LOC110526282
TU601786 other downstream 2305577 62149773 ~ 62152218 (+) True G531406
TU602760 other downstream 2976224 62820420 ~ 62822616 (+) True G532259
TU602899 other downstream 3168062 63012258 ~ 63014986 (+) False LOC110526311
TU602734 other downstream 3188735 63032931 ~ 63198734 (+) False G532237

Expression Profile


TU598990 Expression in all Baseline Samples

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TU598990 Expression in each Bioproject

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TU598990 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 20.
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