RNA id: TCONS_00032786


Basic Information

Item Value
RNA id TCONS_00032786
length 715
lncRNA type inter_gene
GC content 0.38
exon number 4
gene id XLOC_016704
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 40198817 ~ 40199780 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGAACATCCACGGAAACGCAACATGCAGCTCAACCAGAAGATGATGATGAGACTTGCTGCCATTGCTGTCATTATGTCAGTGATGATCATGAAGACGAATGGACAAAACCGGTTTGTTCAATGCTGCACAAGCGTCTCCACTAAGGAAATCACGTTGCCTATAACCGGATTCAAATATCAGAAGAGAAATCCTCCATGCGTCAAAGCAGTCATTTTCTTCACAAAAGAGGGTGAACAATGCATTCACTGGAACCAGAGCTGGGTTCGGGAGAAGATCCAGGAGCTCATAATCTCAATGGAGAAAATGAACAGCACTGTTTCTACACCGCTGAAGATGAACAGCACTCTGTCTACACTTCTGAGGATCAACAGCACTATTTCCACAGCTCTGCAGATGAACAGCACTCTCTCTACTCCTCTCTCCACCTCCtcttcttaataataaaaacactaaagATATTTAAACTGATCAAAATGGGTTCTGCTGAAATAAGTCAGCTTGTTTTAAAAATGCGGTGAATGCTTCATGCTATTTATTGTAACTTATTGTAttgaaaattgtatttatttggtaTTCTAACAATTTGACTAAAAGCTAtgttgtactgtactgtatgtacttgAACTGTATGCTTGTCATCCATAAGTTATGTTAAAATGATGAACCTGTACAAAGACGAATCGTGTTTAAATAAAGTAGTCAGTAAATCTTAAA

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0007517 muscle organ development biological_process
GO:0007519 skeletal muscle tissue development biological_process
GO:0006936 muscle contraction biological_process
GO:0010927 cellular component assembly involved in morphogenesis biological_process
GO:0055001 muscle cell development biological_process
GO:0055002 striated muscle cell development biological_process
GO:0031032 actomyosin structure organization biological_process
GO:0016203 muscle attachment biological_process
GO:0097435 supramolecular fiber organization biological_process
GO:0030239 myofibril assembly biological_process
GO:0050746 regulation of lipoprotein metabolic process biological_process
GO:0050748 negative regulation of lipoprotein metabolic process biological_process
GO:0006500 N-terminal protein palmitoylation biological_process
GO:0060254 regulation of N-terminal protein palmitoylation biological_process
GO:0060262 negative regulation of N-terminal protein palmitoylation biological_process
GO:0003008 system process biological_process
GO:0003012 muscle system process biological_process
GO:0030029 actin filament-based process biological_process
GO:0003015 heart process biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0061061 muscle structure development biological_process
GO:0060537 muscle tissue development biological_process
GO:0060538 skeletal muscle organ development biological_process
GO:1903059 regulation of protein lipidation biological_process
GO:1903060 negative regulation of protein lipidation biological_process
GO:0014706 striated muscle tissue development biological_process
GO:0060047 heart contraction biological_process
GO:0042383 sarcolemma cellular_component
GO:0099080 supramolecular complex cellular_component
GO:0099081 supramolecular polymer cellular_component
GO:0043292 contractile fiber cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0016528 sarcoplasm cellular_component
GO:0016529 sarcoplasmic reticulum cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0005901 caveola cellular_component
GO:0099512 supramolecular fiber cellular_component
GO:0031672 A band cellular_component
GO:0031674 I band cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component
GO:0031430 M band cellular_component
GO:0051015 actin filament binding molecular_function
GO:0003779 actin binding molecular_function
GO:0044877 protein-containing complex binding molecular_function
GO:0008092 cytoskeletal protein binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00032785 lncRNA downstream 2247 40194067 ~ 40196570 (-) True XLOC_016703
TCONS_00033898 lncRNA downstream 165759 39936564 ~ 40033058 (-) False XLOC_016700
TCONS_00033900 lncRNA downstream 165790 40008087 ~ 40033027 (-) False XLOC_016700
TCONS_00033897 lncRNA downstream 165791 39846697 ~ 40033026 (-) False XLOC_016700
TCONS_00033901 lncRNA upstream 6128 40205908 ~ 40211792 (-) True XLOC_016705
TCONS_00033902 lncRNA upstream 334183 40533963 ~ 40534863 (-) True XLOC_016706
TCONS_00033903 lncRNA upstream 423174 40622954 ~ 40643790 (-) False XLOC_016709
TCONS_00033904 lncRNA upstream 423174 40622954 ~ 40680407 (-) False XLOC_016709
TCONS_00032790 lncRNA upstream 423174 40622954 ~ 40712235 (-) False XLOC_016709
TCONS_00032784 mRNA downstream 7214 40181633 ~ 40191603 (-) True XLOC_016702
TCONS_00032781 mRNA downstream 62793 40069639 ~ 40136024 (-) False XLOC_016701
TCONS_00032780 mRNA downstream 62799 40067821 ~ 40136018 (-) False XLOC_016701
TCONS_00032793 mRNA upstream 630988 40830768 ~ 40889465 (-) False XLOC_016712
TCONS_00032792 mRNA upstream 630988 40830768 ~ 40889465 (-) False XLOC_016712
TCONS_00032794 mRNA upstream 630988 40830768 ~ 40890264 (-) False XLOC_016712
TCONS_00032795 mRNA upstream 633194 40832974 ~ 40890004 (-) True XLOC_016712
TCONS_00032796 mRNA upstream 702217 40901997 ~ 41123797 (-) False XLOC_016713
TCONS_00032779 other downstream 128965 40067808 ~ 40069852 (-) False XLOC_016701
TCONS_00032777 other downstream 172195 39926961 ~ 40026622 (-) False XLOC_016700
TCONS_00032778 other downstream 172195 40008738 ~ 40026622 (-) True XLOC_016700
TCONS_00032776 other downstream 446261 39735552 ~ 39752556 (-) True XLOC_016698
TCONS_00032769 other downstream 827890 39370811 ~ 39370927 (-) True XLOC_016694
TCONS_00032787 other upstream 345166 40544946 ~ 40545061 (-) True XLOC_016707
TCONS_00032788 other upstream 395595 40595375 ~ 40595494 (-) True XLOC_016708
TCONS_00032799 other upstream 1012198 41211978 ~ 41212094 (-) True XLOC_016715
TCONS_00032800 other upstream 1221826 41421606 ~ 41421722 (-) True XLOC_016717
TCONS_00032808 other upstream 1417427 41617207 ~ 41620112 (-) True XLOC_016721

Expression Profile

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