RNA id: TU599793


Basic Information

Item Value
RNA id TU599793
length 220
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G529500
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 60405637 ~ 60405856 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caaaacactatgaaatGATCGATCCCTAGGTTGTTAGTGGGTCCATTAAATGTGTATGTAAAAACATTAAATTTAACAAAACCATTTCACATCCAATTAGTCCATTCTCCCAGTCAAATGCTGACCTAAATATGGACTTTTGTCAGTCTGTACTCATCaccagatacatttttttttctccatcattGGGCAGATGCTTTCACTGACATAATGATTACCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU599325 lncRNA upstream 325265 60080169 ~ 60080372 (+) True G529052
TU599258 lncRNA upstream 371340 60034072 ~ 60034297 (+) True G528986
TU599069 lncRNA upstream 505024 59896793 ~ 59900613 (+) True G528802
TU598990 lncRNA upstream 561441 59842580 ~ 59844196 (+) True G528728
TU598964 lncRNA upstream 598899 59805938 ~ 59806738 (+) True G528705
TU599795 lncRNA downstream 366 60406222 ~ 60406430 (+) True G529502
TU599797 lncRNA downstream 866 60406722 ~ 60407035 (+) True G529504
TU599799 lncRNA downstream 1833 60407689 ~ 60408096 (+) True G529506
TU599817 lncRNA downstream 14946 60420802 ~ 60421066 (+) True G529523
TU599819 lncRNA downstream 19650 60425506 ~ 60425828 (+) True G529525
XM_036980620.1 mRNA upstream 230088 60167505 ~ 60175549 (+) True LOC110526261
XM_021607061.2 mRNA upstream 543991 59851162 ~ 59861646 (+) True LOC110526256
LOC118965037 mRNA upstream 558051 59843628 ~ 59847586 (+) True LOC118965037
XM_036980612.1 mRNA upstream 1028956 59343119 ~ 59376681 (+) True tshz3b
XM_036980609.1 mRNA upstream 1405099 58814483 ~ 59000538 (+) True LOC110526935
XM_021607074.2 mRNA downstream 24345 60430201 ~ 60432307 (+) True LOC100653452
XR_005052179.1 mRNA downstream 42750 60448606 ~ 60452270 (+) False LOC110526265
XR_005052180.1 mRNA downstream 42750 60448606 ~ 60452270 (+) False LOC110526265
XR_005052181.1 mRNA downstream 42750 60448606 ~ 60452270 (+) False LOC110526265
XR_005052182.1 mRNA downstream 42750 60448606 ~ 60452270 (+) False LOC110526265
TU598912 other upstream 633553 59771708 ~ 59772084 (+) True G528653
TU597653 other upstream 1626620 58778723 ~ 58779017 (+) True G527450
TU596824 other upstream 2033669 58318920 ~ 58371968 (+) True LOC110526933
TU596784 other upstream 2132801 58272079 ~ 58272836 (+) True G526628
TU596687 other upstream 2292818 58110906 ~ 58112819 (+) True G526547
TU601664 other downstream 1565880 61971736 ~ 61979527 (+) True LOC110526282
TU601786 other downstream 1743917 62149773 ~ 62152218 (+) True G531406
TU602760 other downstream 2414564 62820420 ~ 62822616 (+) True G532259
TU602899 other downstream 2606402 63012258 ~ 63014986 (+) False LOC110526311
TU602734 other downstream 2627075 63032931 ~ 63198734 (+) False G532237

Expression Profile