RNA id: TCONS_00033901


Basic Information

Item Value
RNA id TCONS_00033901
length 1012
lncRNA type inter_gene
GC content 0.32
exon number 2
gene id XLOC_016705
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 40205908 ~ 40211792 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tcaggTGCTTCATTGCTTTAATGGCCCATGGTGAAGTCGGATCTGAGCAGATTGTGATTCCTTTTAATgTCGGAAGAGTGTAGTGGCCTGATTTGGTGTGCCGGAAGTATTGTGTGCTGCTGAGCAAAACTCATATGAGACTCTAAAGGTACTGTATGTGACGCACACGCTCTCCAACCAGGCATAAATCACAGGACACTCACATAACAAACTAATGTCATAtgctaaattaaatttaacatgTTGGTATAATTGTTACACTGACATATACCTACATAACTGAAGCAGAAAATAAATCTGTTCTAAAGTGCTtccataattttaattatataatataatttctgaTTATATTTTTCTCAAACACACTGTACCAATTCCAATTCCAAGCTatgtaaatcataataaatactatttattttgtataaacaTCAATAAATGATGAGTGGGAAAACACCTTTCCTTCAAAAAATGATTAAGGGTTTTTTCTTTCACAGTTAAGTTGAGCCCAAAAAGAAGATATAACATGCGTATCATGAATTACACCATGAGGAATGCTTTAGTCTCCAGATTAatttttaagattattatttAAGCAAGTAAGTAAGTTTTAACCTTTCAGGGTAGAAGTCAAGTTGAAGAGaccagaatatatatttttttcttgtacgAGTTAAGAGTTTATCTTACAGAATTTGTCAGTAAGTTGGTTTTAGGACCTCATTTTAAGTCCTCGCTGAACAAAATTGCCTTTCTTACTTGCCTTTCTTAATTTGTCTCTTGTCCTAATATCTaaagattcttaaatcaaaaaagcGTTTGATATACAAGCAAGTTGTACAAGCAAGTTGAGTTTTTCCTAAAAACAAGTTAAAtcatctgccaatggggtaagcaaactAATATTACGTCAAAAGGAAATACAAGATTATTGCACttgcttgtttcaaggaaaaactcacataattttatattataaatcatACTGTTTCTGAAACAAGTCAGTATTAAGCCA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00032786 lncRNA downstream 6128 40198817 ~ 40199780 (-) True XLOC_016704
TCONS_00033387 lncRNA downstream 6496 40198817 ~ 40199412 (-) False XLOC_016704
TCONS_00032785 lncRNA downstream 9338 40194067 ~ 40196570 (-) True XLOC_016703
TCONS_00033898 lncRNA downstream 172850 39936564 ~ 40033058 (-) False XLOC_016700
TCONS_00033900 lncRNA downstream 172881 40008087 ~ 40033027 (-) False XLOC_016700
TCONS_00033902 lncRNA upstream 322171 40533963 ~ 40534863 (-) True XLOC_016706
TCONS_00033903 lncRNA upstream 411162 40622954 ~ 40643790 (-) False XLOC_016709
TCONS_00033904 lncRNA upstream 411162 40622954 ~ 40680407 (-) False XLOC_016709
TCONS_00032790 lncRNA upstream 411162 40622954 ~ 40712235 (-) False XLOC_016709
TCONS_00032789 lncRNA upstream 411162 40622954 ~ 40712241 (-) False XLOC_016709
TCONS_00032784 mRNA downstream 14305 40181633 ~ 40191603 (-) True XLOC_016702
TCONS_00032781 mRNA downstream 69884 40069639 ~ 40136024 (-) False XLOC_016701
TCONS_00032780 mRNA downstream 69890 40067821 ~ 40136018 (-) False XLOC_016701
TCONS_00032793 mRNA upstream 618976 40830768 ~ 40889465 (-) False XLOC_016712
TCONS_00032792 mRNA upstream 618976 40830768 ~ 40889465 (-) False XLOC_016712
TCONS_00032794 mRNA upstream 618976 40830768 ~ 40890264 (-) False XLOC_016712
TCONS_00032795 mRNA upstream 621182 40832974 ~ 40890004 (-) True XLOC_016712
TCONS_00032796 mRNA upstream 690205 40901997 ~ 41123797 (-) False XLOC_016713
TCONS_00032779 other downstream 136056 40067808 ~ 40069852 (-) False XLOC_016701
TCONS_00032777 other downstream 179286 39926961 ~ 40026622 (-) False XLOC_016700
TCONS_00032778 other downstream 179286 40008738 ~ 40026622 (-) True XLOC_016700
TCONS_00032776 other downstream 453352 39735552 ~ 39752556 (-) True XLOC_016698
TCONS_00032769 other downstream 834981 39370811 ~ 39370927 (-) True XLOC_016694
TCONS_00032787 other upstream 333154 40544946 ~ 40545061 (-) True XLOC_016707
TCONS_00032788 other upstream 383583 40595375 ~ 40595494 (-) True XLOC_016708
TCONS_00032799 other upstream 1000186 41211978 ~ 41212094 (-) True XLOC_016715
TCONS_00032800 other upstream 1209814 41421606 ~ 41421722 (-) True XLOC_016717
TCONS_00032808 other upstream 1405415 41617207 ~ 41620112 (-) True XLOC_016721

Expression Profile

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