RNA id: TU599859


Basic Information

Item Value
RNA id TU599859
length 327
lncRNA type intronic
GC content 0.52
exon number 1
gene id G529559
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 60478691 ~ 60479017 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgctttccacctggctactcctaccccggtcaacagcactgcaccccccacagcaactcgcccaagccttccccatttctccttctcccaaatccagtcagctgatgttctgaaagagctgcaaaatctggacccctacaaatcagctgggctagacaatctggaccctttctttctaaaattatctgccgaaattgttgccacccctattactagcctgttcaacctctctttcgtgtcgtctgagattcccaaagattggaaagcagctgcggtcaaccccctcttcaaaggggggggggcactcttgacccaaactgctacaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU599822 lncRNA upstream 43384 60432829 ~ 60435307 (+) True G529528
TU599819 lncRNA upstream 52863 60425506 ~ 60425828 (+) True G529525
TU599817 lncRNA upstream 57625 60420802 ~ 60421066 (+) True G529523
TU599799 lncRNA upstream 70595 60407689 ~ 60408096 (+) True G529506
TU599797 lncRNA upstream 71656 60406722 ~ 60407035 (+) True G529504
TU599861 lncRNA downstream 2959 60481976 ~ 60482185 (+) True G529561
TU599862 lncRNA downstream 5245 60484262 ~ 60484462 (+) True G529562
TU599870 lncRNA downstream 13240 60492257 ~ 60492474 (+) True G529570
TU599871 lncRNA downstream 13756 60492773 ~ 60492977 (+) True G529571
TU599873 lncRNA downstream 14925 60493942 ~ 60494141 (+) True G529573
XR_005052179.1 mRNA upstream 26421 60448606 ~ 60452270 (+) False LOC110526265
XR_005052180.1 mRNA upstream 26421 60448606 ~ 60452270 (+) False LOC110526265
XR_005052181.1 mRNA upstream 26421 60448606 ~ 60452270 (+) False LOC110526265
XR_005052182.1 mRNA upstream 26421 60448606 ~ 60452270 (+) False LOC110526265
XR_005052178.1 mRNA upstream 26421 60448646 ~ 60452270 (+) True LOC110526265
XM_021607080.2 mRNA downstream 28942 60507959 ~ 60525243 (+) True LOC110526268
XM_036980624.1 mRNA downstream 192691 60671708 ~ 60752783 (+) False LOC110526270
XM_036980622.1 mRNA downstream 192696 60671713 ~ 60752783 (+) False LOC110526270
XM_036980623.1 mRNA downstream 192696 60671713 ~ 60752783 (+) True LOC110526270
XM_021607089.2 mRNA downstream 336566 60815583 ~ 60863460 (+) False LOC110526274
TU598912 other upstream 706607 59771708 ~ 59772084 (+) True G528653
TU597653 other upstream 1699674 58778723 ~ 58779017 (+) True G527450
TU596824 other upstream 2106723 58318920 ~ 58371968 (+) True LOC110526933
TU596784 other upstream 2205855 58272079 ~ 58272836 (+) True G526628
TU596687 other upstream 2365872 58110906 ~ 58112819 (+) True G526547
TU601664 other downstream 1492719 61971736 ~ 61979527 (+) True LOC110526282
TU601786 other downstream 1670756 62149773 ~ 62152218 (+) True G531406
TU602760 other downstream 2341403 62820420 ~ 62822616 (+) True G532259
TU602899 other downstream 2533241 63012258 ~ 63014986 (+) False LOC110526311
TU602734 other downstream 2553914 63032931 ~ 63198734 (+) False G532237

Expression Profile