RNA id: TU599861



Basic Information


Item Value
RNA id TU599861
length 210
lncRNA type intronic
GC content 0.40
exon number 1
gene id G529561
representative True

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 60481976 ~ 60482185 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GTGCTGTTGCTATAAAAACCTCCTTTCCCAGTAAACACAAACACCTTTGGCCAACATATCAAAATGTGTtgggaatacagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgccacatttcaggcttcaaacataaagatataaaactgtattttttgtgaagaatcaacaacaagtgggacacaatcatgaagtgg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU599859 lncRNA upstream 2959 60478691 ~ 60479017 (+) True G529559
TU599822 lncRNA upstream 46669 60432829 ~ 60435307 (+) True G529528
TU599819 lncRNA upstream 56148 60425506 ~ 60425828 (+) True G529525
TU599817 lncRNA upstream 60910 60420802 ~ 60421066 (+) True G529523
TU599799 lncRNA upstream 73880 60407689 ~ 60408096 (+) True G529506
TU599862 lncRNA downstream 2077 60484262 ~ 60484462 (+) True G529562
TU599870 lncRNA downstream 10072 60492257 ~ 60492474 (+) True G529570
TU599871 lncRNA downstream 10588 60492773 ~ 60492977 (+) True G529571
TU599873 lncRNA downstream 11757 60493942 ~ 60494141 (+) True G529573
TU599876 lncRNA downstream 15419 60497604 ~ 60497993 (+) True G529575
XR_005052179.1 mRNA upstream 29706 60448606 ~ 60452270 (+) False LOC110526265
XM_021607080.2 mRNA downstream 25774 60507959 ~ 60525243 (+) True LOC110526268
XM_036980624.1 mRNA downstream 189523 60671708 ~ 60752783 (+) False LOC110526270
XM_036980622.1 mRNA downstream 189528 60671713 ~ 60752783 (+) False LOC110526270
XM_036980623.1 mRNA downstream 189528 60671713 ~ 60752783 (+) True LOC110526270
XM_021607089.2 mRNA downstream 333398 60815583 ~ 60863460 (+) False LOC110526274
TU598912 other upstream 709892 59771708 ~ 59772084 (+) True G528653
TU597653 other upstream 1702959 58778723 ~ 58779017 (+) True G527450
TU596824 other upstream 2110008 58318920 ~ 58371968 (+) True LOC110526933
TU596784 other upstream 2209140 58272079 ~ 58272836 (+) True G526628
TU596687 other upstream 2369157 58110906 ~ 58112819 (+) True G526547
TU601664 other downstream 1489551 61971736 ~ 61979527 (+) True LOC110526282
TU601786 other downstream 1667588 62149773 ~ 62152218 (+) True G531406
TU602760 other downstream 2338235 62820420 ~ 62822616 (+) True G532259
TU602899 other downstream 2530073 63012258 ~ 63014986 (+) False LOC110526311
TU602734 other downstream 2550746 63032931 ~ 63198734 (+) False G532237

Expression Profile