RNA id: TU599862



Basic Information


Item Value
RNA id TU599862
length 201
lncRNA type intronic
GC content 0.37
exon number 1
gene id G529562
representative True

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 60484262 ~ 60484462 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATTACACACCCACACATGTGCGCAAACATGCGCATACACACAAATCTACTCAAAATGTCATACGTTGTTCTCAAGGTATAAAATGCTGAATTCTGTTAGGAATATTGTTCTATAAAACAAAGCCATTTCTAAGACTGTGCTATATTGCGTAATTCCATGTTAAAAAGGAATAAGCTACTAGCAAATGTGACAACCCACCCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU599861 lncRNA upstream 2077 60481976 ~ 60482185 (+) True G529561
TU599859 lncRNA upstream 5245 60478691 ~ 60479017 (+) True G529559
TU599822 lncRNA upstream 48955 60432829 ~ 60435307 (+) True G529528
TU599819 lncRNA upstream 58434 60425506 ~ 60425828 (+) True G529525
TU599817 lncRNA upstream 63196 60420802 ~ 60421066 (+) True G529523
TU599870 lncRNA downstream 7795 60492257 ~ 60492474 (+) True G529570
TU599871 lncRNA downstream 8311 60492773 ~ 60492977 (+) True G529571
TU599873 lncRNA downstream 9480 60493942 ~ 60494141 (+) True G529573
TU599876 lncRNA downstream 13142 60497604 ~ 60497993 (+) True G529575
TU599874 lncRNA downstream 13685 60498147 ~ 60499184 (+) True G529574
XR_005052179.1 mRNA upstream 31992 60448606 ~ 60452270 (+) False LOC110526265
XM_021607080.2 mRNA downstream 23497 60507959 ~ 60525243 (+) True LOC110526268
XM_036980624.1 mRNA downstream 187246 60671708 ~ 60752783 (+) False LOC110526270
XM_036980622.1 mRNA downstream 187251 60671713 ~ 60752783 (+) False LOC110526270
XM_036980623.1 mRNA downstream 187251 60671713 ~ 60752783 (+) True LOC110526270
XM_021607089.2 mRNA downstream 331121 60815583 ~ 60863460 (+) False LOC110526274
TU598912 other upstream 712178 59771708 ~ 59772084 (+) True G528653
TU597653 other upstream 1705245 58778723 ~ 58779017 (+) True G527450
TU596824 other upstream 2112294 58318920 ~ 58371968 (+) True LOC110526933
TU596784 other upstream 2211426 58272079 ~ 58272836 (+) True G526628
TU596687 other upstream 2371443 58110906 ~ 58112819 (+) True G526547
TU601664 other downstream 1487274 61971736 ~ 61979527 (+) True LOC110526282
TU601786 other downstream 1665311 62149773 ~ 62152218 (+) True G531406
TU602760 other downstream 2335958 62820420 ~ 62822616 (+) True G532259
TU602899 other downstream 2527796 63012258 ~ 63014986 (+) False LOC110526311
TU602734 other downstream 2548469 63032931 ~ 63198734 (+) False G532237

Expression Profile