RNA id: TU599874



Basic Information


Item Value
RNA id TU599874
length 559
lncRNA type antisense_over
GC content 0.47
exon number 2
gene id G529574
representative True

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 60498147 ~ 60499184 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ACCCCCTCCAATTCCATAAGCTTACTCTAAAGATAAGTTGGTTCCAACATTTCCTCTTGAGCAGACCAGGTGCCTGCTTCTCAATGTTCCCCAACATCTCCATTTTCCCAAGGCTTTGACCAATCGGGCAGGGAGTTCATGGGTCAGAGTTCATACCCTGTTAGACACACTGTGGTGGTCATCCATGGGTTTTTCCACAGTAACAATCTTAGGTTTCACATGTCAATCCCTCAAAgcaaccatctggtctgtctatAAGATCAGTCTTTGGCCCAGGATCTTCCGGTTGATCTCGGCCAATGCCACCGAAAACACAAATGCTTTCTCATCTGAGAGGTTGGCATAGATATCAACTTCTTTCTCAATTTTTTctttctcctcctcctgcttcttCAGCCCAACTGTCTTTGGCCTGCCCCGCCCTCTCCGGATCTGATCCGATTGGCTGTTGGAGCGGCATCGCCTTCTGTTCTCCATGTCATTGGTTGACGGAGAGTTGATCTTCTCTCTGCGAATTCTTTCAGTTCTCCTCCTCTTTGCATCCAATTTGTCTAAATAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU599876 lncRNA upstream 154 60497604 ~ 60497993 (+) True G529575
TU599873 lncRNA upstream 4006 60493942 ~ 60494141 (+) True G529573
TU599871 lncRNA upstream 5170 60492773 ~ 60492977 (+) True G529571
TU599870 lncRNA upstream 5673 60492257 ~ 60492474 (+) True G529570
TU599862 lncRNA upstream 13685 60484262 ~ 60484462 (+) True G529562
TU599877 lncRNA downstream 2705 60501889 ~ 60504820 (+) True G529576
TU599899 lncRNA downstream 35709 60534893 ~ 60535096 (+) True G529592
TU599832 lncRNA downstream 41555 60540739 ~ 60540954 (+) True G529537
TU599837 lncRNA downstream 44545 60543729 ~ 60560821 (+) False G529539
TU599836 lncRNA downstream 59967 60559151 ~ 60560821 (+) True G529539
XR_005052179.1 mRNA upstream 45877 60448606 ~ 60452270 (+) False LOC110526265
XM_021607080.2 mRNA downstream 8775 60507959 ~ 60525243 (+) True LOC110526268
XM_036980624.1 mRNA downstream 172524 60671708 ~ 60752783 (+) False LOC110526270
XM_036980622.1 mRNA downstream 172529 60671713 ~ 60752783 (+) False LOC110526270
XM_036980623.1 mRNA downstream 172529 60671713 ~ 60752783 (+) True LOC110526270
XM_021607089.2 mRNA downstream 316399 60815583 ~ 60863460 (+) False LOC110526274
TU598912 other upstream 726063 59771708 ~ 59772084 (+) True G528653
TU597653 other upstream 1719130 58778723 ~ 58779017 (+) True G527450
TU596824 other upstream 2126179 58318920 ~ 58371968 (+) True LOC110526933
TU596784 other upstream 2225311 58272079 ~ 58272836 (+) True G526628
TU596687 other upstream 2385328 58110906 ~ 58112819 (+) True G526547
TU601664 other downstream 1472552 61971736 ~ 61979527 (+) True LOC110526282
TU601786 other downstream 1650589 62149773 ~ 62152218 (+) True G531406
TU602760 other downstream 2321236 62820420 ~ 62822616 (+) True G532259
TU602899 other downstream 2513074 63012258 ~ 63014986 (+) False LOC110526311
TU602734 other downstream 2533747 63032931 ~ 63198734 (+) False G532237

Expression Profile