RNA id: TU599837


Basic Information

Item Value
RNA id TU599837
length 2547
lncRNA type read_through
GC content 0.43
exon number 4
gene id G529539
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 60543729 ~ 60560821 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTGAGTAAGGTCTCTTTTAATGAAACAATGAAATCCTACAACCAATGATTGAAATAATAAATGGTGGCCCATGTCTGTCTGATGCAACAGGTTGTGCTTGTTTTAAATGTCAGCTCAGAAGACACAATCTGAAGTCCTTATTCCACCATTCAGGTATAACAACGTTTCTGAATTAAAAGTCGCTAAACTATTTAGGCTACTATTTCACATCACTCTGAATTCGTTACCCACTCCTATATTACCCTTTTAGCTCATCTATCTTGTCAAAAGTTCATGGAAACTCAACCCTGTACCAGGCGAGTTTGTGTGGGCATCCCAATCCCGTTATAGATTCCCTCTGTTTTATATCCTCTGGGTTCACCACTATAGTCCACATCTGAACTCAAAAATCCCCAAATGGACCCAAGATGTTAAAAAGCACACATCTGTCTAGATATTATACATGAACATCTGACACTTCTGAATGTATATTTACGGTGTTCTCTCGAGACATGGAATATTCATTGGGGCTCTGcaagtgtgtggatgtgtgtgtgtgtgtgtgtgtgtgtgtggtaatcatAACCCGCATCAAATCATTGTCATCATATATGCACATTTTTATCAAATCAAACAATATCAAATGAATGGGTTAAAAGCCAAGCAACAACATGAAGCTTGATATTCTGgttttaatatacagtacatagacgAAAATAAAGACGAAAATAAGTTATGAGAAGAATAATATATCTGTGCTTGACATGTGAATGAATGTAAATACAGCAAACAGTCTAAAGTAATTTTCATCAGTGTCTCTGTTTCCCTGTGTGGCAGTGTCCAGTTCTTTTGAGCATACAGGGGAAAGGCTGAATCTGCATGCGAGAGTCTTCCCTATTATACTGATCAAAAGAAggaaaacagaaaataaatgagtctccttttcttccccctctcctctcttcacctagAAGTCCATGGACATTGAGCGCTGCTGGGGGTCGACGATGCTGGTGTTATTGCGGCCCCCGTTGCGGGAGCTGAGGGTGCCACAGCCTCCTGGTCCAGAACTTGGCCCAGCCGCTCCGCCGCGGACGTAGATCTCACAGGGGATCTCCTCCATGACGCGGTCTTCAATGACCTTCTCGGCACAATCATGAGTCTGTTTGTAGCCGTAGCAGCTTTTCTTATAGGTGCTGTTAAAGGTCTTCATGGGCGGGGGCTTGGAGAAGTCGTTGTGGTAGGAGAGCTCCATGGAGCTGAGGGTGGTGCGGCTCTGCTTCAAGCTGCTCCCCGAGGCCTGCAAGCCACAATGGTGCTCGTGGACACAGCGAGACGTGGTGGAGGAGCGGCGTAGCTTGTGGTAGCTCTCCAGCTCCTCTGATAGGTCGGCCAGGTCAGAGGAGATCTCCTTGTCACGGAGGGAGAAGAGCTCGTAGTGGGGAGGGTCAAAGACCTCCTGGAAGCCAGCCTTGTTGAAGACTGGCCGGCGAGCTACCAACTTCTTCCTGGGCTGCTTCATCTGTACCAGGATGGAGATGATGAGTAGGACTAGAACCACGCCTGAAGACACGCCGATCACCGTGCCGTGGGTATTAGTGATCTGATGGAACAGGCCATTGGATTTCTTCTCCTTACAATGGTTCTCATCCCAGGGGTAGACACAGTTCTGTACCCCATTACACACCAAGGAGTTATTGATGCACATGTTGCTATGGCAAAAGAATGTGTTGCTATTGCATGGGGCTGAAACAAGAGACAAGAatccacacaaaacacaaaaataaATCTTAGACATCACTATTAATcattagtttaaaaaaaagttcAAACCACAGGCATGAGATGATAGCAAAATAAATATTTGGATGTTAGACCAGTACCACCTGAAAACAGTGCCCCACGTTAATTCAAAATGAAATACAATTTTTTAATATTAGAGGCTTAGACATTGATTCCAATACCACTGTGATAATATTGATGATTGCACTTTCTGTTGGTTAAATAACAAACCTATTTCCCCTTGTAAGTAAAAGTAGTTTAAGTGTTATGTGGACCATTCTTCAATTTAACACCACAGTTTAGTTGACGTTTTTAATGAACACAATGTTTGGCAGTCCAAAGACACACCATGTTTATCATGTGAGACAAACAAGATTATTAAGAGTGAGAAAGACTAAAAAGTCAACTGGGATTTCACTCAGTGTACTTTCACTCAGTAGTCCTGTTTAGATTTGGGTTCAGCCATCATTTTGGCCGTTGAAATGTATTAGGGAATGTGAATTTAAAAAAGAACACGTTCAAATTCCAACCAAATCTGTGCAAGTATGCGAGAagtaacctgtctgtctcttttacATTTGATCATCTTTAATGGATATTTAAACACTTAAATGGCTCATCCTCAAGAGGCCGAggggattaaataaataaacaattccaTCGGCCAGCAAACTTAAATAAAACAGAAAGCAGGCATGACTGTTTCCCATGGTCCATCTCTTCCTGTGCTCCTTCACATAGCATCAAAATGGAACCGGTGTGCTTCCTGTCTCTTCTCCCGGTCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU599832 lncRNA upstream 2775 60540739 ~ 60540954 (+) True G529537
TU599899 lncRNA upstream 8633 60534893 ~ 60535096 (+) True G529592
TU599877 lncRNA upstream 38909 60501889 ~ 60504820 (+) True G529576
TU599874 lncRNA upstream 44545 60498147 ~ 60499184 (+) True G529574
TU599876 lncRNA upstream 45736 60497604 ~ 60497993 (+) True G529575
TU599984 lncRNA downstream 156215 60717036 ~ 60718709 (+) True G529675
TU599840 lncRNA downstream 192451 60753272 ~ 60753484 (+) True G529542
TU600193 lncRNA downstream 200257 60761078 ~ 60761319 (+) True G529875
TU600208 lncRNA downstream 212896 60773717 ~ 60773958 (+) True G529890
TU600216 lncRNA downstream 216559 60777380 ~ 60777622 (+) True G529898
XM_021607080.2 mRNA upstream 18486 60507959 ~ 60525243 (+) True LOC110526268
XR_005052180.1 mRNA upstream 91459 60448606 ~ 60452270 (+) False LOC110526265
XM_036980624.1 mRNA downstream 110887 60671708 ~ 60752783 (+) False LOC110526270
XM_036980622.1 mRNA downstream 110892 60671713 ~ 60752783 (+) False LOC110526270
XM_036980623.1 mRNA downstream 110892 60671713 ~ 60752783 (+) True LOC110526270
XM_021607089.2 mRNA downstream 254762 60815583 ~ 60863460 (+) False LOC110526274
XM_021607090.2 mRNA downstream 268754 60829575 ~ 60863460 (+) True LOC110526274
TU598912 other upstream 771645 59771708 ~ 59772084 (+) True G528653
TU597653 other upstream 1764712 58778723 ~ 58779017 (+) True G527450
TU596824 other upstream 2171761 58318920 ~ 58371968 (+) True LOC110526933
TU596784 other upstream 2270893 58272079 ~ 58272836 (+) True G526628
TU596687 other upstream 2430910 58110906 ~ 58112819 (+) True G526547
TU601664 other downstream 1410915 61971736 ~ 61979527 (+) True LOC110526282
TU601786 other downstream 1588952 62149773 ~ 62152218 (+) True G531406
TU602760 other downstream 2259599 62820420 ~ 62822616 (+) True G532259
TU602899 other downstream 2451437 63012258 ~ 63014986 (+) False LOC110526311
TU602734 other downstream 2472110 63032931 ~ 63198734 (+) False G532237

Expression Profile