RNA id: TU599984


Basic Information

Item Value
RNA id TU599984
length 1652
lncRNA type intronic
GC content 0.42
exon number 2
gene id G529675
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 60717036 ~ 60718709 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtacagtagtgaggctataacagtacagtagtgaggctataacagtacagtagcgaagctataacagtacagtagcgaggctatatactgtacagtagtgaggctataacagtacagtagcgaagctataacagtacagtagcgaggctatatactgtacagtagtgaggctataacagtacagtagtgaggctataacagtacagtagcgaggctatatactgtacagtagcaaagctataacagtacagtagtgaggctataacagtaaagTAGTGAAGCTATAAcagtacagtagcgaggctatatactgtacagtagcgaggctatatactgtacagtagcgaggctataacagtacagtagcgaggctataacagtacagtagcgaggctataacagtacagtagtgaggctataacagtacagtagtgaggctataacagtacagtagtgaggctataacagtacagtagcgaggctatatactgtacagtagcgaagctataacagtacagtagtgaggctataacagtaaagTAGTGAAGCTATAAcagtacagtagcgaggctatatactgtacagtagcgaggctataacagtacagtagtgaggctataacagtacagtagtgaggctataacagtacagtagtgaggctataacagtacagtagtgaggctataacagtacagtagtgaggctataacagtacagtagcgaggctttaacagtacagtagtgaggctataacagtacagtagcgaggctttaacagtacagtagcgaggctatatactgtacagtagcgaggctatataatgtacagtagcgaggctataacagtacagtagtgaagctatgacagtacagtagtgaggctataacagtacagtagtgaggctataacagtacagtagtgaggctataacagtacagtagtgaagctataacagtacagtagcgaggctatatactgtacagtagcgaggctataacagtacagtagtgaagctataacagtacagtagtgaggctataacagtacagtagtgaggctataacagtacagtagtgaggctttaacagtacagtagcgaggctatatactgtacagttgcgaggctataacagtacagTAGCGAGGCCAAATActgtacagtagcgaggctatataatgtacaatagcgaggctataacagtagcgaggctataacagtagcgaggctatataatgtacagtagcgaggctataacagtagcgaggctatttacattcaccggttagtcgggctaattgaggtagtatgtacgtgtaggtatggttaaagtgactatgcatatatgataagcagagagtagcagtagcgtaaaagaggagaATGTGAAATGAATGCTCCTTGACTGTGGTTTGTTCCACATGAGAAGCGACGCGTTTGCTCGGCTCAGAGGTTGAGTCAGATCAAAGACACCCCAGGGAGTTTCAGGAAACACTCTCCAAATAAACACAGAACAAAAGCCAGAGAGGAGATATCATTAAGCCATATGCCTTAAAATATACacccacccacaaacacacacacaccatcaaagCCCAGCAAACACGTAATACACAATGCACGTAATACACAAGTATACACCAGATTAGCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU599837 lncRNA upstream 156215 60543729 ~ 60560821 (+) False G529539
TU599836 lncRNA upstream 156215 60559151 ~ 60560821 (+) True G529539
TU599832 lncRNA upstream 176082 60540739 ~ 60540954 (+) True G529537
TU599899 lncRNA upstream 181940 60534893 ~ 60535096 (+) True G529592
TU599877 lncRNA upstream 212216 60501889 ~ 60504820 (+) True G529576
TU599840 lncRNA downstream 34563 60753272 ~ 60753484 (+) True G529542
TU600193 lncRNA downstream 42369 60761078 ~ 60761319 (+) True G529875
TU600208 lncRNA downstream 55008 60773717 ~ 60773958 (+) True G529890
TU600216 lncRNA downstream 58671 60777380 ~ 60777622 (+) True G529898
TU600258 lncRNA downstream 135071 60853780 ~ 60854103 (+) True G529940
XM_021607080.2 mRNA upstream 191793 60507959 ~ 60525243 (+) True LOC110526268
XR_005052180.1 mRNA upstream 264766 60448606 ~ 60452270 (+) False LOC110526265
XM_021607089.2 mRNA downstream 96874 60815583 ~ 60863460 (+) False LOC110526274
XM_021607090.2 mRNA downstream 110866 60829575 ~ 60863460 (+) True LOC110526274
XM_036980630.1 mRNA downstream 1167124 61885833 ~ 61902001 (+) True LOC110526277
XM_021607098.2 mRNA downstream 1197010 61915719 ~ 61958209 (+) False LOC110526278
XM_021607099.2 mRNA downstream 1222806 61941515 ~ 61958209 (+) False LOC110526278
TU598912 other upstream 944952 59771708 ~ 59772084 (+) True G528653
TU597653 other upstream 1938019 58778723 ~ 58779017 (+) True G527450
TU596824 other upstream 2345068 58318920 ~ 58371968 (+) True LOC110526933
TU596784 other upstream 2444200 58272079 ~ 58272836 (+) True G526628
TU596687 other upstream 2604217 58110906 ~ 58112819 (+) True G526547
TU601664 other downstream 1253027 61971736 ~ 61979527 (+) True LOC110526282
TU601786 other downstream 1431064 62149773 ~ 62152218 (+) True G531406
TU602760 other downstream 2101711 62820420 ~ 62822616 (+) True G532259
TU602899 other downstream 2293549 63012258 ~ 63014986 (+) False LOC110526311
TU602734 other downstream 2314222 63032931 ~ 63198734 (+) False G532237

Expression Profile