RNA id: TU600193


Basic Information

Item Value
RNA id TU600193
length 242
lncRNA type inter_gene
GC content 0.61
exon number 1
gene id G529875
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 60761078 ~ 60761319 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cgcagctggccacgacagggagacccatggggcggcgcacaattgacttagagtcatccgggttaggggaggatttggccggcagggatgtccctggcccatcacgcactagcgactcctgtggtgggacaggcgcagtgcacactgacacggttgccaggtgtacagtgtttcctccgacacattggtgtgaccggcttccgggttaagtgggctttgtgtcaagaagcagtgcggcttgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU599840 lncRNA upstream 7594 60753272 ~ 60753484 (+) True G529542
TU599984 lncRNA upstream 42369 60717036 ~ 60718709 (+) True G529675
TU599837 lncRNA upstream 200257 60543729 ~ 60560821 (+) False G529539
TU599836 lncRNA upstream 200257 60559151 ~ 60560821 (+) True G529539
TU599832 lncRNA upstream 220124 60540739 ~ 60540954 (+) True G529537
TU600208 lncRNA downstream 12398 60773717 ~ 60773958 (+) True G529890
TU600216 lncRNA downstream 16061 60777380 ~ 60777622 (+) True G529898
TU600258 lncRNA downstream 92461 60853780 ~ 60854103 (+) True G529940
TU600499 lncRNA downstream 203416 60964735 ~ 60965227 (+) True G530174
TU600506 lncRNA downstream 207856 60969175 ~ 60969376 (+) True G530181
XM_036980624.1 mRNA upstream 8295 60671708 ~ 60752783 (+) False LOC110526270
XM_036980622.1 mRNA upstream 8295 60671713 ~ 60752783 (+) False LOC110526270
XM_036980623.1 mRNA upstream 8295 60671713 ~ 60752783 (+) True LOC110526270
XM_021607080.2 mRNA upstream 235835 60507959 ~ 60525243 (+) True LOC110526268
XR_005052178.1 mRNA upstream 308808 60448646 ~ 60452270 (+) True LOC110526265
XM_021607089.2 mRNA downstream 54264 60815583 ~ 60863460 (+) False LOC110526274
XM_021607090.2 mRNA downstream 68256 60829575 ~ 60863460 (+) True LOC110526274
XM_036980630.1 mRNA downstream 1124514 61885833 ~ 61902001 (+) True LOC110526277
XM_021607098.2 mRNA downstream 1154400 61915719 ~ 61958209 (+) False LOC110526278
XM_021607099.2 mRNA downstream 1180196 61941515 ~ 61958209 (+) False LOC110526278
TU598912 other upstream 988994 59771708 ~ 59772084 (+) True G528653
TU597653 other upstream 1982061 58778723 ~ 58779017 (+) True G527450
TU596824 other upstream 2389110 58318920 ~ 58371968 (+) True LOC110526933
TU596784 other upstream 2488242 58272079 ~ 58272836 (+) True G526628
TU596687 other upstream 2648259 58110906 ~ 58112819 (+) True G526547
TU601664 other downstream 1210417 61971736 ~ 61979527 (+) True LOC110526282
TU601786 other downstream 1388454 62149773 ~ 62152218 (+) True G531406
TU602760 other downstream 2059101 62820420 ~ 62822616 (+) True G532259
TU602899 other downstream 2250939 63012258 ~ 63014986 (+) False LOC110526311
TU602734 other downstream 2271612 63032931 ~ 63198734 (+) False G532237

Expression Profile