RNA id: TCONS_00033903


Basic Information

Item Value
RNA id TCONS_00033903
length 940
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id XLOC_016709
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 40622954 ~ 40712263 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTCATCATCGTTTTTTCCATAAATCTTGTCCAATCCTGGCCAGtcaggaTGATTTTAAGACAGACAACATTAAGAGCTGACCGCTTTGAGATGGCCTGGAGCAAATTGAAGCACTGATTGAATCCAGAGCCGAAGGAGCTTAAAAGAATCAAGACCCACTTGAGTTTGATGGAGAGCAAGAGAGACAGACGCAGCTGTATGTCCACGAGCTAAAGCTCATCAGCCTCAACAACAGGGAGCAGACTCACTTCAGGCGCTGAGAGCGAGCTGTTGGTGGAGTTTCGTCAGCCAATCGCAGATGCTGCATCACGTCCAGGTCTGTGAGTGAGCGTTTGCTCAGTAAACATGGCCATACCTCAGCTGAAGACTGAGTCAACAGCAGAACAGATGGCGAGATCCTGCAGGAGAGGTTTGGTGTACACAGAGCCGGGACATCATCTCTTGAATGAATGAGGAGACAAAGACAGATCACAGGCTTACAGAAAGACAGCTCcaatgaaaaaaaagtgaaatcattGCGGACGCTTTGGTTGAAGCAGGGGTTCATATGACTGGTACAGTAATCCCTTTCTGACTTTAACTTGTATGTTGTGGAAAAGAAAAGGATAGGAAAAGATGTTAAGAGAGGGGAGTTTTAGGCCATGtttacactaatgttttttagttttaaaacgcgattttagaatgaaaaaaaattcacatccACTGGTGTTTCAGGCTTTTTCGTATTTCACCATGCATTTCCTCTGATAAATCTTTATTGTGTGCATATAGCCTGACATTAAGCACATGTTGCCAAAACCACACAGTGAGCCTAAAGTTTCttatttttcaatgaaaacaaAAGGAGGCAGTTATTGTTTTGTTATACATTTGCACACAGTGAAGAtaacggtcatataaatatgtacatgGTGCCTTAACGTTTTTGATGACcat

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033902 lncRNA downstream 88091 40533963 ~ 40534863 (-) True XLOC_016706
TCONS_00033901 lncRNA downstream 411162 40205908 ~ 40211792 (-) True XLOC_016705
TCONS_00032786 lncRNA downstream 423174 40198817 ~ 40199780 (-) True XLOC_016704
TCONS_00033387 lncRNA downstream 423542 40198817 ~ 40199412 (-) False XLOC_016704
TCONS_00032785 lncRNA downstream 426384 40194067 ~ 40196570 (-) True XLOC_016703
TCONS_00033907 lncRNA upstream 58580 40702370 ~ 40712204 (-) True XLOC_016709
TCONS_00033389 lncRNA upstream 122811 40766601 ~ 40769804 (-) False XLOC_016710
TCONS_00033908 lncRNA upstream 123435 40767225 ~ 40769784 (-) True XLOC_016710
TCONS_00032791 lncRNA upstream 142875 40786665 ~ 40804968 (-) True XLOC_016711
TCONS_00033909 lncRNA upstream 389729 41033519 ~ 41123797 (-) False XLOC_016713
TCONS_00032784 mRNA downstream 431351 40181633 ~ 40191603 (-) True XLOC_016702
TCONS_00032781 mRNA downstream 486930 40069639 ~ 40136024 (-) False XLOC_016701
TCONS_00032780 mRNA downstream 486936 40067821 ~ 40136018 (-) False XLOC_016701
TCONS_00032793 mRNA upstream 186978 40830768 ~ 40889465 (-) False XLOC_016712
TCONS_00032792 mRNA upstream 186978 40830768 ~ 40889465 (-) False XLOC_016712
TCONS_00032794 mRNA upstream 186978 40830768 ~ 40890264 (-) False XLOC_016712
TCONS_00032795 mRNA upstream 189184 40832974 ~ 40890004 (-) True XLOC_016712
TCONS_00032796 mRNA upstream 258207 40901997 ~ 41123797 (-) False XLOC_016713
TCONS_00032788 other downstream 27460 40595375 ~ 40595494 (-) True XLOC_016708
TCONS_00032787 other downstream 77893 40544946 ~ 40545061 (-) True XLOC_016707
TCONS_00032779 other downstream 553102 40067808 ~ 40069852 (-) False XLOC_016701
TCONS_00032777 other downstream 596332 39926961 ~ 40026622 (-) False XLOC_016700
TCONS_00032778 other downstream 596332 40008738 ~ 40026622 (-) True XLOC_016700
TCONS_00032799 other upstream 568188 41211978 ~ 41212094 (-) True XLOC_016715
TCONS_00032800 other upstream 777816 41421606 ~ 41421722 (-) True XLOC_016717
TCONS_00032808 other upstream 973417 41617207 ~ 41620112 (-) True XLOC_016721
TCONS_00032811 other upstream 1302185 41945975 ~ 41946896 (-) True XLOC_016725
TCONS_00032833 other upstream 1728219 42372009 ~ 42375109 (-) True XLOC_016738

Expression Profile

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