RNA id: TU601305



Basic Information


Item Value
RNA id TU601305
length 430
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G530951
representative True

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 61495723 ~ 61496152 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ttactaatctTACATACTAGGTATTAGGCTGGCCTACTTACATGCTCCCTTGCCAGTTGCTGCCACATATAGTAGCTTTACCTGCTAGTCCCGAATGTGCATGCTCACATGGAACTGAGCAGAAAGTACTTCAAATATATGTCAGACACAAACTCTCCAACACATTACACAACAGACTTGACAAAATAACAATATCAAGAGCTACCCTTATAACTTTCTGATGCCAACTCAAGTGTTCTTTTTTAGTAATACCAATATCCCTGTATTCTAAAGGCCCACAGGGCAATAATCAATAACAGTGATGGAAACAAGTGGAGGTAATCAATAAACACATGCAGTGCATATTTTTGATCTCATTTTTACCTTAAATGCTAAGCTAGGCAGGTAACTTCAATAGTACATAAGTTAACACACATGATTGATTCTGAAT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU601296 lncRNA upstream 9347 61486171 ~ 61486376 (+) True G530942
TU601286 lncRNA upstream 15909 61479405 ~ 61479814 (+) True G530932
TU601274 lncRNA upstream 17837 61473163 ~ 61477886 (+) True G530920
TU601228 lncRNA upstream 58087 61437413 ~ 61437636 (+) True G530875
TU601092 lncRNA upstream 137113 61358065 ~ 61358610 (+) True G530740
TU601320 lncRNA downstream 7824 61503976 ~ 61504246 (+) True G530966
TU601325 lncRNA downstream 15294 61511446 ~ 61518459 (+) False G530970
TU601326 lncRNA downstream 15294 61511446 ~ 61514889 (+) True G530970
TU601374 lncRNA downstream 90076 61586228 ~ 61586728 (+) True G531018
TU601516 lncRNA downstream 267532 61763684 ~ 61763939 (+) True G531155
XM_021607089.2 mRNA upstream 632263 60815583 ~ 60863460 (+) False LOC110526274
XM_021607090.2 mRNA upstream 632263 60829575 ~ 60863460 (+) True LOC110526274
XM_036980624.1 mRNA upstream 742940 60671708 ~ 60752783 (+) False LOC110526270
XM_036980630.1 mRNA downstream 389681 61885833 ~ 61902001 (+) True LOC110526277
XM_021607098.2 mRNA downstream 419567 61915719 ~ 61958209 (+) False LOC110526278
XM_021607099.2 mRNA downstream 445363 61941515 ~ 61958209 (+) False LOC110526278
XM_021607100.2 mRNA downstream 465234 61961386 ~ 61964415 (+) True LOC110526279
XM_021607105.2 mRNA downstream 475335 61971487 ~ 61979525 (+) False LOC110526282
TU598912 other upstream 1723639 59771708 ~ 59772084 (+) True G528653
TU597653 other upstream 2716706 58778723 ~ 58779017 (+) True G527450
TU596824 other upstream 3123755 58318920 ~ 58371968 (+) True LOC110526933
TU596784 other upstream 3222887 58272079 ~ 58272836 (+) True G526628
TU596687 other upstream 3382904 58110906 ~ 58112819 (+) True G526547
TU601664 other downstream 475584 61971736 ~ 61979527 (+) True LOC110526282
TU601786 other downstream 653621 62149773 ~ 62152218 (+) True G531406
TU602760 other downstream 1324268 62820420 ~ 62822616 (+) True G532259
TU602899 other downstream 1516106 63012258 ~ 63014986 (+) False LOC110526311
TU602734 other downstream 1536779 63032931 ~ 63198734 (+) False G532237

Expression Profile