RNA id: TU601325



Basic Information


Item Value
RNA id TU601325
length 695
lncRNA type antisense_over
GC content 0.54
exon number 3
gene id G530970
representative False

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 61511446 ~ 61518459 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GGGTTGTTGGCCACGTCTGTGTCTTTAGCGTGTACACGGCCCACCACGGTCCCATCACGGGCATTCTCCTCCACCTCGAAGCTGTAGCTAGTTGCCATGAAAGCAGGTGGCTCGTCTGCGTCCTCCACCATAACCTTAACCGTGGCTGTGTCTTTGTAGGGGCCCCAGGCGATGAAACGGGGGTCCAAGTGTGTGTTGGATGCCTCTACTCTCAGGGTGTAAGCCCTCTTAATCTCAAACACAGTCATCCCATCGCCCTCGATGAAACGATATGACACAAGTCCATTCTCCCCCAGATCTGGATCTTTAGCCTTCAGACGGCCTACCTCCTCACCCGAAACCTTGTCCTCTGAAACGGACATGGCGTATACACTCTGAGGGAACTTTGGTGGGTTGTCGTTGACGTCCGTCAGGGTGATTTTCACTTCTGTTGTCCCTGACAGTCCCCCCATGTGTCCCCCCATGTCCTTGGCTTGTATGACGACGTCATATTCCTGCCGCGCTTCCCTGTCCATGTTGGGCAGAGCTGTCCGGATTATCcctggggacaggagaggaggaaaatgGCTTTAATTCAAGAAGGAGCTGCCTGTGACCTTTCAACAGCCTACTACTCTGCAAGGCCTACTGGGAGGAGCAGGGCATGTTGGGTCATCACTGAAACGTGAGATCACATTGTGACAAGTGCCATCGCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU601320 lncRNA upstream 7200 61503976 ~ 61504246 (+) True G530966
TU601305 lncRNA upstream 15294 61495723 ~ 61496152 (+) True G530951
TU601296 lncRNA upstream 25070 61486171 ~ 61486376 (+) True G530942
TU601286 lncRNA upstream 31632 61479405 ~ 61479814 (+) True G530932
TU601274 lncRNA upstream 33560 61473163 ~ 61477886 (+) True G530920
TU601374 lncRNA downstream 67769 61586228 ~ 61586728 (+) True G531018
TU601516 lncRNA downstream 245225 61763684 ~ 61763939 (+) True G531155
TU601517 lncRNA downstream 245510 61763969 ~ 61764333 (+) True G531156
TU601541 lncRNA downstream 274348 61792807 ~ 61793248 (+) True G531180
TU601545 lncRNA downstream 278870 61797329 ~ 61797535 (+) True G531184
XM_021607089.2 mRNA upstream 647986 60815583 ~ 60863460 (+) False LOC110526274
XM_021607090.2 mRNA upstream 647986 60829575 ~ 60863460 (+) True LOC110526274
XM_036980624.1 mRNA upstream 758663 60671708 ~ 60752783 (+) False LOC110526270
XM_036980630.1 mRNA downstream 367374 61885833 ~ 61902001 (+) True LOC110526277
XM_021607098.2 mRNA downstream 397260 61915719 ~ 61958209 (+) False LOC110526278
XM_021607099.2 mRNA downstream 423056 61941515 ~ 61958209 (+) False LOC110526278
XM_021607100.2 mRNA downstream 442927 61961386 ~ 61964415 (+) True LOC110526279
XM_021607105.2 mRNA downstream 453028 61971487 ~ 61979525 (+) False LOC110526282
TU598912 other upstream 1739362 59771708 ~ 59772084 (+) True G528653
TU597653 other upstream 2732429 58778723 ~ 58779017 (+) True G527450
TU596824 other upstream 3139478 58318920 ~ 58371968 (+) True LOC110526933
TU596784 other upstream 3238610 58272079 ~ 58272836 (+) True G526628
TU596687 other upstream 3398627 58110906 ~ 58112819 (+) True G526547
TU601664 other downstream 453277 61971736 ~ 61979527 (+) True LOC110526282
TU601786 other downstream 631314 62149773 ~ 62152218 (+) True G531406
TU602760 other downstream 1301961 62820420 ~ 62822616 (+) True G532259
TU602899 other downstream 1493799 63012258 ~ 63014986 (+) False LOC110526311
TU602734 other downstream 1514472 63032931 ~ 63198734 (+) False G532237

Expression Profile