RNA id: TU601902


Basic Information

Item Value
RNA id TU601902
length 4761
lncRNA type antisense_over
GC content 0.43
exon number 2
gene id G531510
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 62501787 ~ 62506601 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caatAAAAATAGTATTTGCCACAAGTTGTGACAAATGAAAGAGTTATTGTGTTTCAGGGTTGATTCGCAGACAAGCAAAGCACACAGAGAGCATTAAAGGATAATGTGTATTGAAATGTCGTCAAAACCTATGGTAATGTTGTGGATAATATGGTGGGTGAGTTCACTCTGTATTTCCCTCTCAGTGCACTGCTACATCTTTAGAATTCTCTGCCATTATTCTGACTGAGATGTTTCATTAAAGCTCTGAAGGTTCAAGTAGTTTGTACAGAGAAACTGTGAAAAGAGAaaaacaagtacacacacacacacacacacacacacacacacacacacaccatgcgtttattccatctgtaagcAAGGCTTAGGAAGAAAACTCAAAGCAATCATTACGCATTCCGGAGATGTTTCTGTAGTCTTATCTGAGGCATTAGATATGTAGAAACAAGCGCTTTGATTGCTTGAATAAATAATCTACAAATCTCCACCTTCACAGATGCATTGgttgtttgtttttgtcttgtgCTTTGAGCATGTGTTTATTTCAGACACTTTGGTTAACAGGTATAGTTGGCCTCAAGCCTCCTTATTTCTGGTCTTTCTCGACACAATTTCAAAATCCACCGCGGTGCAGAAATACTTTGGTCTGTGCTTTTATTTGTTGTGGACTACAAATGTAATGGTTTAACGTTCAGCTTGGGGATGGAAGGAATTACTGTATATCAAACCCTGGACAGTGTTGTGTACGTAGAGAGTCCTAGAATCAAAATCATCTGAGTGTTCCTCATTTGATCACTATTTCTGACTGACAAGAGGTTGAGGTGCGAAAATATACACATTGCAAAGTAATCAGTATTAGACCTTTCGGGTTTGTTTCCTATTTGCTCTGATGTTTGTGTGAGTTTGCATGTCTGCTCGCAGCCCTGCTCCCAAAGCTCAGTGACCTCTCCCAGTCATGTGCTGCAAGGTCACAGGAGGTAGCTTGTGGTGGGTCAGGAGACAGGAGGGATGTTCAGGTGGGGGTTAAAGAGCAGAGGGCTGAAGAGGTTTAGAAACACAAACAGGCTGAAGTCGTTTCAATACACCGGTAATAACACACGACACACATATACACGCAGATGCAGGGTACCTCGCAGCTTATCACACTTGACCGATTTATATATTACTTTTTGATACGGACATATAGGAAAATAGATCATGTACATATGTGATAAATTAAACAACACTGTCAATGCTAATTGACGTCTAATCGTTTCTGCGTCAATATGTCACTCTGGGTTTTAAATGTGAAAGAGTCTGGCAGACCATACCTGTAACAGTAGAACATAAAACAACACAAAAGCTTGGTCCATTTTAGAGTTATGTGGCCAATTGGTTCGGGATTATTACATCATTCATTTTAACATGGCAGGTACAGTCCCTATTTAATGCTATGTTTGAAAGCCATTTGAGCCTGTAATTCTAACTTAACGATGTTTTAACTTATAGCTTGTGATGACATTACTGTATGAGATGGCATTCCTCCTTGTTAGCCTGTGATTGTGAAGACATCTGTTCCAACTCTCCCAGGTTCTGAGTCCTTTTTGCCTTGCTAGGATCCTAAAGCTACACGAGGACAAAATGACTGAGACTGCATCTTCACAAACTAATCTATGGACAGAGTAAGAAAAAATAACCAGTGGAAAGGATTGGGCAGTATCATGGTTAGGTTAAGCTTCAGACTTCCAGACCAGTGTGTTGGCTTTTTTTTTTGAGGGCAGCCCACAGGGTTTTCAGTGTGGCCCACTGCAGTGGCACTTCAGCCCAATGGATGGCAATGTTTCACACAGATACAGATAACTTTTTGGGCACAAGTTCTTGCGTTCTGAATCCAATATCCAGAGTAGGGGAGTAATTTAGCCTCATGCTAGGACGCTTTTAGAATCAATGTGTGATaagcctctctttctcctctttaaAACCATCATCTTGGGCCTGTCATGAGAGCTATAGCTGGCTCCTCTTGAAGGGAGTCAGTGGAGTACGCCGCCATCAATCATAGGGGGAGCTATAAGAACTGTGACTCCAGAAGAAAACCACTATCGCTGCCAACATCCCTCCTCACAACATCTTTTTGAGATTACACACTCAACAGATTTTGCTAATCTGGTAGAAAATAAGGATTTATGAGAAATGAAAATTCCTTTGATTAAAAAAATGAACTGGAAAGAAATCATATTCTGGACATTGTACATTACTTTCAAGGTTTCTGTTATTTGGCAAACACATTTTTGGACCTCTTTAAATACTATGTACATTCACATTAAGTtactgatgttattttaaatatatttatatgtatctATATTATATGACCCCCTATGGGTAGTTGCTGAGGTTCCACCCAGTAGCTGAATTCTCTTCATATTGCACCTCTGTCCTCTCACTGTCTTACAATGCGAGCAATATAAAATATTCTACAAGAGGATTTTCTTTTCATTGATAAAGATACAACAAATTGAACGATAAGTACAACATGGGGTTTCTCTCCTAGAGTCTTTGCTCCTGCTTCAATGTTTTGTCCAAACTTAAAAAGAAGAAAAGTCCCTCTTTCTGAAAACGCACAAGGGCAGCACAGGTGgacaccagagacagagacacattttttttatcgAGAAACAAAGAAAGGAATATCTACAAGCAGGTTTGATCCCTTCCCAGATATCTGCTCAGAGGTTATGTCCAAAGGGGGTAGGGTTGACAGAGGAACGAGAGAGTTTTAGGGAGGAACATACAGGAAAGTGGGggggaggtagaaagagagagagaagagaactgaGTCTACACCGCTTATGAGGCTCGTTAGTCTGTTTGTCATGCTTTGGAAAAAGAGGGTGAAAAGGTACGACTCACTGAAATGTATCCTCTTGATAGAgttgaaaaaaaaacataattaggAACAAAAGTCTTGTCCGTACTGTACAATGCTTGCTTGGACAGGTTCTCAGTTTTTTTGAGGTTATTTTTGGCAGTTCCAATGCCTTTCATCTTCTTTTTGAGGCCAAGTAGCTGCTTCTTTGTCCATTCCGTTGCCATTTACATAAATCACTGTCACATTCAGTGGTTCGTCCTTCCATTTCAATTGTCTATTGTGGCAGGCGTTTCAAATGTTTGCTCTGgatttctctctctgtggatcACTGTGGGTATTTTCAGGCTGACAGAGGCCAGCTACAGTACACTCAATATAGAGTTTTAGTGTGACTCCTGTTGTTGCTCTACAGGCTTTATCTCCCAGAGCTTTGCTGCTGAGGAGGTGAAGTTGCTTGCGTTTGGTTACAAGATGAGTGCTTCTCCTTGTCTCTTAGTAACTTTGGCAGTGTAATAAAAAGGTTTGGATCATGTTTTTTCCTTCTTTGAATTCATTTGGGTTCACATCGGTACAGAGAGGTGAGTCCGGTGTCATTTTCTTGGCTCGCTAGCAAGGTAGTtcacttttttttaaaattatttttcttattattatttgtttagaATATTTGGACTTTTCTTTGTCTTCCTTAAAGCCCAAAAATGAATCATTAGATAAATAATTAGCCGTATTATGGAAGAGtttctgagggggaaaaaaaaattgcaccaTGAGTGTATCTTATCCCCTCTCCTACATCAGAACAGGGGTTTCCGGACTGGTGTCTGGCTTCTTAGATAGGGGACCTCAATCAGGACATGTCCATGGCCCAGGACACAGAGGAGCCTGTTCTATAGAcgcatctatctatccatctctcaGAGGTCTGGGCTGTTAGTGCACATGCTGGGGGTTAAGAGTCATCCCACTCCTGCTGCGTTAAAGGGAAATCCTCTCCAAGTGCTAAATTCAGATATCTCTTCTTCACAATAAGTGTGGTACCATAACGGGTCTCATGCAATGCAAGCCCCCGACATACACAGCATTGACTGGGCTTATGTTACTGAGGCCACGTGTTGGTCTGGCATATAACAATGCTTATCTTCACACGACATTATCAGAGTTCAATAACCAAGTCtggtgtgttttttgttgttgttgtaatagatGGGAAGTTCTGCTTCCGCATTGGTTTATTTTGAGCATTCAGTAAATTAAGCCCTAGCCATGCTAAACACAACAGTGGACCCCTTGACTAGTTTCGAGTTTGACAGAGAGAAAGTCTGTGCGGCTGAGAGACAGTCAGAACGATTTTTGGGGGGAGGTTGAGGAGTTGAGAAAACGAGGCCTTCGGGTAGCTAAGAAGTAGTCAACGGTGCAGTATTCACGGTAGGACCACTACAGATGCCGTACAAAAGAAGGAAAGGGTGCAGTGCGATCGATGGAGATTCCTCTGTTCATTTAGGATGGATGGCAGCTGTACTGTAGCATCAGTGGGAGTGACTGGGCGTGGCAGGGCGTGGCAGGGCGGGGTCAGCGAGAGGTGGCGTCCAGCAGTGCAGGGGTCGCTGGGGTGGTGGAGCGTGAGGCACTGCTGGAGCTAGCCTCCTTAGGACTCCCGGAGAGACTGCCTCCCCCACCACCGCTGGTCTGGCCGGGCAGGGAGAGTGGACCAGGGGGGGTGCTCTCTGAGTGTGTAGGGGGTGCGCTGGAGGAGGGGGTGCCCAGAGGAACACTGCTGCCCCCGGGGAGGCCCTGTAGACCCTGGCCACAGACGTGGTGGTGCTTCTCCCAGTCTTTGTGCTGGCAGAAGGAGCCGCAGTAGCGTGCCGTGTTGCAGCCGCTGCACGTCTCACTGGCCTTGCGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU601806 lncRNA upstream 179836 62321521 ~ 62321951 (+) True G531418
TU601791 lncRNA upstream 318436 62160521 ~ 62183351 (+) True G531410
TU601719 lncRNA upstream 444640 62056916 ~ 62057147 (+) True G531346
TU601718 lncRNA upstream 444990 62056564 ~ 62056797 (+) True G531345
TU601714 lncRNA upstream 448579 62052998 ~ 62053208 (+) True G531341
TU601943 lncRNA downstream 54262 62560863 ~ 62561065 (+) True G531544
TU601903 lncRNA downstream 58427 62565028 ~ 62565767 (+) True G531511
TU601950 lncRNA downstream 66271 62572872 ~ 62573091 (+) True G531551
TU601952 lncRNA downstream 68284 62574885 ~ 62575117 (+) True G531553
TU601963 lncRNA downstream 86972 62593573 ~ 62593787 (+) True G531563
XM_021607128.2 mRNA upstream 10099 62490495 ~ 62491688 (+) True LOC110526300
XM_021607127.2 mRNA upstream 10101 62490082 ~ 62491686 (+) False LOC110526300
XM_021607123.2 mRNA upstream 37054 62460321 ~ 62464733 (+) True LOC110526297
XM_021607120.2 mRNA upstream 115455 62377872 ~ 62386332 (+) True LOC110526295
XM_021607118.2 mRNA upstream 151992 62346767 ~ 62349795 (+) True LOC110526293
XR_005052419.1 mRNA downstream 61448 62568049 ~ 62569967 (+) True LOC118965084
XM_021607139.2 mRNA downstream 141527 62648128 ~ 62683202 (+) False LOC110526303
XM_021607143.2 mRNA downstream 216844 62723445 ~ 62742080 (+) True LOC110526307
XM_036980646.1 mRNA downstream 246105 62752706 ~ 62947192 (+) False LOC110526939
XM_036980647.1 mRNA downstream 246105 62752706 ~ 62947192 (+) False LOC110526939
TU601786 other upstream 349569 62149773 ~ 62152218 (+) True G531406
TU601664 other upstream 522260 61971736 ~ 61979527 (+) True LOC110526282
TU598912 other upstream 2729703 59771708 ~ 59772084 (+) True G528653
TU597653 other upstream 3722770 58778723 ~ 58779017 (+) True G527450
TU596824 other upstream 4129819 58318920 ~ 58371968 (+) True LOC110526933
TU602760 other downstream 313819 62820420 ~ 62822616 (+) True G532259
TU602899 other downstream 505657 63012258 ~ 63014986 (+) False LOC110526311
TU602734 other downstream 526330 63032931 ~ 63198734 (+) False G532237
TU603025 other downstream 801932 63308533 ~ 63343755 (+) True G532489
TU603064 other downstream 831635 63338236 ~ 63339498 (+) False LOC100750227

Expression Profile