RNA id: TU601952


Basic Information

Item Value
RNA id TU601952
length 233
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G531553
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 62574885 ~ 62575117 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaggaagccattcctcagtaaaagacacatgacagcccgcttggagtttgcaaaaagtaacgtaaagactctcagaccatgaaaaacaagattctctggtctgatgaaaccaaaattgaactctttggcctgattgccaagcgtcacatctggaggaaacctgccaccatccctacagtgaagcatggtggtggcagaatcatgctgtggggatgttcttcagtggcagggac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU601950 lncRNA upstream 1794 62572872 ~ 62573091 (+) True G531551
TU601903 lncRNA upstream 9118 62565028 ~ 62565767 (+) True G531511
TU601943 lncRNA upstream 13820 62560863 ~ 62561065 (+) True G531544
TU601902 lncRNA upstream 68284 62501787 ~ 62506601 (+) True G531510
TU601806 lncRNA upstream 252934 62321521 ~ 62321951 (+) True G531418
TU601963 lncRNA downstream 18456 62593573 ~ 62593787 (+) True G531563
TU601993 lncRNA downstream 83413 62658530 ~ 62658844 (+) True G531589
TU602001 lncRNA downstream 94624 62669741 ~ 62670041 (+) True G531596
TU601987 lncRNA downstream 96774 62671891 ~ 62685350 (+) True LOC110526303
TU602694 lncRNA downstream 111034 62686151 ~ 62686431 (+) True G532210
XR_005052419.1 mRNA upstream 4918 62568049 ~ 62569967 (+) True LOC118965084
XM_021607128.2 mRNA upstream 83197 62490495 ~ 62491688 (+) True LOC110526300
XM_021607127.2 mRNA upstream 83199 62490082 ~ 62491686 (+) False LOC110526300
XM_021607123.2 mRNA upstream 110152 62460321 ~ 62464733 (+) True LOC110526297
XM_021607120.2 mRNA upstream 188553 62377872 ~ 62386332 (+) True LOC110526295
XM_021607139.2 mRNA downstream 73011 62648128 ~ 62683202 (+) False LOC110526303
XM_021607143.2 mRNA downstream 148328 62723445 ~ 62742080 (+) True LOC110526307
XM_036980646.1 mRNA downstream 177589 62752706 ~ 62947192 (+) False LOC110526939
XM_036980647.1 mRNA downstream 177589 62752706 ~ 62947192 (+) False LOC110526939
XM_036980648.1 mRNA downstream 177589 62752706 ~ 62947192 (+) False LOC110526939
TU601786 other upstream 422667 62149773 ~ 62152218 (+) True G531406
TU601664 other upstream 595358 61971736 ~ 61979527 (+) True LOC110526282
TU598912 other upstream 2802801 59771708 ~ 59772084 (+) True G528653
TU597653 other upstream 3795868 58778723 ~ 58779017 (+) True G527450
TU596824 other upstream 4202917 58318920 ~ 58371968 (+) True LOC110526933
TU602760 other downstream 245303 62820420 ~ 62822616 (+) True G532259
TU602899 other downstream 437141 63012258 ~ 63014986 (+) False LOC110526311
TU602734 other downstream 457814 63032931 ~ 63198734 (+) False G532237
TU603025 other downstream 733416 63308533 ~ 63343755 (+) True G532489
TU603064 other downstream 763119 63338236 ~ 63339498 (+) False LOC100750227

Expression Profile