RNA id: TCONS_00033389


Basic Information

Item Value
RNA id TCONS_00033389
length 1000
lncRNA type inter_gene
GC content 0.35
exon number 3
gene id XLOC_016710
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 40766601 ~ 40769804 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTCGTGTTGTAGCAGTTTAGGTAATGTATTTTCGCGAATGtaaattagtaaaaataataggtttaatCAGATGTGTAGATGAGCACATTTTTAAGATCACTTTGAGACAGTTTATATTAGTGAAACAAGTCACGTCTGAAATTAATACAGTGAATGCAAAGAAAAAGACAACGAAAAGCATGAAAATGGTGACATCTTGTAAAGACGGCTACATCTGGCAGTGCAAGAAGTCATGTAGACGAATTTGGAAAAGTGTAAGGACGAAGTCTATATTTTTCCATTCCCATGCAAGTCATTTCAGTTGGATGAAGTGTATTTACAGtatggcAGAGGGCGTTTTGGAGGTCCGTGGAAAAGGAAATGCTGGGTATTTGGAATGGTTGAAATTTTGCCTTCCTGAAAACCTGTTTTGCAGCTGGTGGACAAACGGGACAAGAAGACCCTTATACCAATCATAGCAAAACATTTCAAGAAAGACAGCATCATTCATAGTGATGAATGGCGTGCATACTCAAGTTTTTCAGAGAGGATACCTACATCACACAGTGAACCACAGCATTAGTTTTGTTATTCCATCATCACGAGTACATACACAATACATTGAAAAGGCATAGGCAAACTACAAAAGGGAAGTATGGAGACTGCGTGCAAACCGGACAGAAAAGTCGCTGAAAAACcatctaatatatatagaatGGACTTATTGGTTGGGTAAGAAACACAAACAAGGGATTCTTGGAAGGCTTATACATGACATCAGTCAGCTCtaccagtgtgtgtgtatacaattaaggtcagaattattagcccccctttgaattttgtttgaaaatgatgTTTTAACGGATttaggaaatattcacagtatgtctaataatatttttttcttctgaagaaagtcttatttgttttattttggctagaataaaagcagttttgaatttttgaaatccattttaaggtcaaaattattagccccttaaagctatatattttttta

Function

GO:

id name namespace
GO:0036342 post-anal tail morphogenesis biological_process
GO:0003002 regionalization biological_process
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033906 lncRNA downstream 54338 40622954 ~ 40712263 (-) False XLOC_016709
TCONS_00033905 lncRNA downstream 54338 40622954 ~ 40712263 (-) False XLOC_016709
TCONS_00032789 lncRNA downstream 54360 40622954 ~ 40712241 (-) False XLOC_016709
TCONS_00032790 lncRNA downstream 54366 40622954 ~ 40712235 (-) False XLOC_016709
TCONS_00033388 lncRNA downstream 54384 40639420 ~ 40712217 (-) False XLOC_016709
TCONS_00032791 lncRNA upstream 16861 40786665 ~ 40804968 (-) True XLOC_016711
TCONS_00033909 lncRNA upstream 263715 41033519 ~ 41123797 (-) False XLOC_016713
TCONS_00033390 lncRNA upstream 392299 41162103 ~ 41447837 (-) False XLOC_016714
TCONS_00032798 lncRNA upstream 392299 41162103 ~ 41447837 (-) False XLOC_016714
TCONS_00033391 lncRNA upstream 392454 41162258 ~ 41447837 (-) False XLOC_016714
TCONS_00032784 mRNA downstream 574998 40181633 ~ 40191603 (-) True XLOC_016702
TCONS_00032781 mRNA downstream 630577 40069639 ~ 40136024 (-) False XLOC_016701
TCONS_00032780 mRNA downstream 630583 40067821 ~ 40136018 (-) False XLOC_016701
TCONS_00032793 mRNA upstream 60964 40830768 ~ 40889465 (-) False XLOC_016712
TCONS_00032792 mRNA upstream 60964 40830768 ~ 40889465 (-) False XLOC_016712
TCONS_00032794 mRNA upstream 60964 40830768 ~ 40890264 (-) False XLOC_016712
TCONS_00032795 mRNA upstream 63170 40832974 ~ 40890004 (-) True XLOC_016712
TCONS_00032796 mRNA upstream 132193 40901997 ~ 41123797 (-) False XLOC_016713
TCONS_00032788 other downstream 171107 40595375 ~ 40595494 (-) True XLOC_016708
TCONS_00032787 other downstream 221540 40544946 ~ 40545061 (-) True XLOC_016707
TCONS_00032779 other downstream 696749 40067808 ~ 40069852 (-) False XLOC_016701
TCONS_00032777 other downstream 739979 39926961 ~ 40026622 (-) False XLOC_016700
TCONS_00032799 other upstream 442174 41211978 ~ 41212094 (-) True XLOC_016715
TCONS_00032800 other upstream 651802 41421606 ~ 41421722 (-) True XLOC_016717
TCONS_00032808 other upstream 847403 41617207 ~ 41620112 (-) True XLOC_016721
TCONS_00032811 other upstream 1176171 41945975 ~ 41946896 (-) True XLOC_016725
TCONS_00032833 other upstream 1602205 42372009 ~ 42375109 (-) True XLOC_016738

Expression Profile

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