RNA id: TU602720



Basic Information


Item Value
RNA id TU602720
length 385
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G532233
representative True

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 62712240 ~ 62712624 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


cacaccatccccactgtcaaacatggtggtggcagcatcatggtttgggcctgcttttcttcagcagggacagggaagatggttaaaattgatgggaagatggatggagccaaatacaggaccattctggaagaatgatggagtctgcaaaagacctgagactgggacggagatttgtcttccaacaagacaatgatccaaaacataaagcaaaatctacaatggaatggttcaaaaataaacatatccaggtgttagaatggccaagtcaaagtccagacctgaatccaatcgagaatctgtggaaagaactgaaaactgctgttcacaaatgctctccatccaacctcactgagctcgagctgttttgcaaggaggaatggga

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU602706 lncRNA upstream 8482 62703540 ~ 62703758 (+) True G532222
TU602694 lncRNA upstream 25809 62686151 ~ 62686431 (+) True G532210
TU601987 lncRNA upstream 26890 62671891 ~ 62685350 (+) True LOC110526303
TU602001 lncRNA upstream 42199 62669741 ~ 62670041 (+) True G531596
TU601993 lncRNA upstream 53396 62658530 ~ 62658844 (+) True G531589
TU602721 lncRNA downstream 104 62712728 ~ 62712939 (+) True G532234
TU602764 lncRNA downstream 508 62713132 ~ 62713348 (+) True G532263
TU602772 lncRNA downstream 29564 62742188 ~ 62742939 (+) True G532270
TU602786 lncRNA downstream 37684 62750308 ~ 62751415 (+) True G532283
TU602757 lncRNA downstream 40122 62752746 ~ 62788133 (+) True LOC110526939
XM_021607139.2 mRNA upstream 29038 62648128 ~ 62683202 (+) False LOC110526303
XR_005052419.1 mRNA upstream 142273 62568049 ~ 62569967 (+) True LOC118965084
XM_021607128.2 mRNA upstream 220552 62490495 ~ 62491688 (+) True LOC110526300
XM_021607127.2 mRNA upstream 220554 62490082 ~ 62491686 (+) False LOC110526300
XM_021607123.2 mRNA upstream 247507 62460321 ~ 62464733 (+) True LOC110526297
XM_021607143.2 mRNA downstream 10821 62723445 ~ 62742080 (+) True LOC110526307
XM_036980646.1 mRNA downstream 40082 62752706 ~ 62947192 (+) False LOC110526939
XM_036980647.1 mRNA downstream 40082 62752706 ~ 62947192 (+) False LOC110526939
XM_036980648.1 mRNA downstream 40082 62752706 ~ 62947192 (+) False LOC110526939
XM_036980649.1 mRNA downstream 40082 62752706 ~ 62947192 (+) False LOC110526939
TU601786 other upstream 560022 62149773 ~ 62152218 (+) True G531406
TU601664 other upstream 732713 61971736 ~ 61979527 (+) True LOC110526282
TU598912 other upstream 2940156 59771708 ~ 59772084 (+) True G528653
TU597653 other upstream 3933223 58778723 ~ 58779017 (+) True G527450
TU596824 other upstream 4340272 58318920 ~ 58371968 (+) True LOC110526933
TU602760 other downstream 107796 62820420 ~ 62822616 (+) True G532259
TU602899 other downstream 299634 63012258 ~ 63014986 (+) False LOC110526311
TU602734 other downstream 320307 63032931 ~ 63198734 (+) False G532237
TU603025 other downstream 595909 63308533 ~ 63343755 (+) True G532489
TU603064 other downstream 625612 63338236 ~ 63339498 (+) False LOC100750227

Expression Profile