RNA id: TU602721


Basic Information

Item Value
RNA id TU602721
length 212
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G532234
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 62712728 ~ 62712939 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gctgaataattttgcacgcccaatttttcagtttttgatttgttaaaaaagtttgaaatatccgataaatgtcgttccacttcatgattgtgtcccacttgttgttgattcttcacaaaaaaatacagttttatatctttatgtttgaagcctgaaatgtggcaaaaggtcgcaaagttcaagggggccgaatactttcgcaaggcactgta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU602720 lncRNA upstream 104 62712240 ~ 62712624 (+) True G532233
TU602706 lncRNA upstream 8970 62703540 ~ 62703758 (+) True G532222
TU602694 lncRNA upstream 26297 62686151 ~ 62686431 (+) True G532210
TU601987 lncRNA upstream 27378 62671891 ~ 62685350 (+) True LOC110526303
TU602001 lncRNA upstream 42687 62669741 ~ 62670041 (+) True G531596
TU602764 lncRNA downstream 193 62713132 ~ 62713348 (+) True G532263
TU602772 lncRNA downstream 29249 62742188 ~ 62742939 (+) True G532270
TU602786 lncRNA downstream 37369 62750308 ~ 62751415 (+) True G532283
TU602757 lncRNA downstream 39807 62752746 ~ 62788133 (+) True LOC110526939
TU602829 lncRNA downstream 133577 62846516 ~ 62848889 (+) True G532322
XM_021607139.2 mRNA upstream 29526 62648128 ~ 62683202 (+) False LOC110526303
XR_005052419.1 mRNA upstream 142761 62568049 ~ 62569967 (+) True LOC118965084
XM_021607128.2 mRNA upstream 221040 62490495 ~ 62491688 (+) True LOC110526300
XM_021607127.2 mRNA upstream 221042 62490082 ~ 62491686 (+) False LOC110526300
XM_021607123.2 mRNA upstream 247995 62460321 ~ 62464733 (+) True LOC110526297
XM_021607143.2 mRNA downstream 10506 62723445 ~ 62742080 (+) True LOC110526307
XM_036980646.1 mRNA downstream 39767 62752706 ~ 62947192 (+) False LOC110526939
XM_036980647.1 mRNA downstream 39767 62752706 ~ 62947192 (+) False LOC110526939
XM_036980648.1 mRNA downstream 39767 62752706 ~ 62947192 (+) False LOC110526939
XM_036980649.1 mRNA downstream 39767 62752706 ~ 62947192 (+) False LOC110526939
TU601786 other upstream 560510 62149773 ~ 62152218 (+) True G531406
TU601664 other upstream 733201 61971736 ~ 61979527 (+) True LOC110526282
TU598912 other upstream 2940644 59771708 ~ 59772084 (+) True G528653
TU597653 other upstream 3933711 58778723 ~ 58779017 (+) True G527450
TU596824 other upstream 4340760 58318920 ~ 58371968 (+) True LOC110526933
TU602760 other downstream 107481 62820420 ~ 62822616 (+) True G532259
TU602899 other downstream 299319 63012258 ~ 63014986 (+) False LOC110526311
TU602734 other downstream 319992 63032931 ~ 63198734 (+) False G532237
TU603025 other downstream 595594 63308533 ~ 63343755 (+) True G532489
TU603064 other downstream 625297 63338236 ~ 63339498 (+) False LOC100750227

Expression Profile