RNA id: TU602760


Basic Information

Item Value
RNA id TU602760
length 2164
RNA type TUCP
GC content 0.56
exon number 2
gene id G532259
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 62820420 ~ 62822616 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggagaggcgggtttccctgttttgacaggaggagaggcgggtttccctgttttgacaggaggagaggcgggtttctgttGCGACGAGGAGCGGCGGGTTTCTGTTGCGACGAGGAGAGGCGGCGGGTTTCTGTTGCGacgaggagaggcgggtttcctTTATGACAGGGAgcggaggagaggcgggtttcctTTATGACAGGGAGCGGAGGAGAGGCTGGACTcagtgttgtgaggaggagaggcgggtttctgtcttgtgaggaggagaggcgagtCTGTCTtgtgataggaggaggaggagaggcaggtttCCTttatgacagggagaggaggtggtgcAGGTTTCTGTGTGGTGatagggagaggagtagagacagGTCTCAATGTtgtgacagggagaggaggagaggcatgtttcagtgttacaggtggaggtggagaggcaGGTTTCAGTGTttttgggggaggaggagaggctggtCTCAATATTGtgacagggagaggagtagagacagGTCTCAATGTTgtaacagggagtgcaggagaggAAGGTCTCAGTGTTGTGATGAGGATTAGCAGGTTTcggtgttgtgaggaggagaggatggtctctgtcttgtgataggaggaggagaggcaggtttCCTttatgacagggagaggaggagaggctggtcTCAGTGTTGTGattgtgataggaggagaggctGGTCTCAGTGTTGTGATTGTGATTAGGAGGAGAGGTTGGTCTCAGTGTTGTGattgtgataggaggagaggctGGTCTCAGTGTTGTGattgtgataggaggagaggctGGTCTCAGTGTTGTGATTGTGATAGGAGGAGTGGCAGATCTCAGTGTTGTGATAGGAAGAGTGGCAGATCTCAGTGTTgtgatagggaggagaggaaggtctcagtgttgtaacagggagaggaggagaggctggacTCAGTattgtgataggaggagaggcgggtctctgttgtgataggaggagaggcgggtctctgttgtgataggaggagaggcgggtctctgtgttgtgaggaggagaggcgggtctctgttgtgataggaggagaggcaggtttctgtgttgtgataggaggagaggcgggtctccgtgttgtaataggaggaggaggagaggcgggtcgccgtgttgtaataggaggaggaggagaggcgggtctccgtgttgtaataggaggaggaggagaggcgggtttccattatgacagggagaggaggagaggcgggtttccattatgacagggagaggggggtttccattatgacagggagaggagaggcgggtttccattatgacagggagaggaggagaggctggtaTCAGTGTTGTGACAGGAAGTGGAGGAGATGCATGTTTCTTTTGCGATatggagaggcgggtctctgtcttgtgaggaggaggagaggcgggtctctgtcttgtgaggaggaggagaggcgggtctctgtcttgtgaggaggaggagaggcgggtctctgtcttgtgaggaggaggagaggcgggtctctgtcttgtgaggaggaggaggagaggcgggtctctgtcttgtgaggaggaggagaggcgggtctctgtcttgtgaggaggaggagaggcgggtctctgtgttgtaatgtgaggGGGacgagaggcgggtctctgtgttgtaatgtgagggggaggagaggcgggtctctgtgttgtaatgtgaggaggaggagaggcgggtctctgtcttgtgaggaggagaggttggtctctgtcttgtgaggaggaggagaggcgggtctctgtcttgtgaggaggaggagaggcgggtctctgtgttgtaatgtgagggggaggagaggcgggtctctgtgttgtaatgtgagggggaggagaggcgggtctctgtgttgtaatgtgaggaggaggagaggcgggtctctgtcttgtgaggaggagaggttggtctctgtcttgtgaggaggaggagaggcgggtctctgtcttgtgaggaggaggagaggcgggtctctgtgttgtaatgtgagggggaggagaggcgggtctctgtgttgtaatgtgagggggaggagaggcgggtctctgtgttgtaatgtgaggaggaggagaggcgggtctctgtgttgtaatgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU602757 lncRNA upstream 32287 62752746 ~ 62788133 (+) True LOC110526939
TU602786 lncRNA upstream 69005 62750308 ~ 62751415 (+) True G532283
TU602772 lncRNA upstream 77481 62742188 ~ 62742939 (+) True G532270
TU602764 lncRNA upstream 107072 62713132 ~ 62713348 (+) True G532263
TU602721 lncRNA upstream 107481 62712728 ~ 62712939 (+) True G532234
TU602829 lncRNA downstream 23900 62846516 ~ 62848889 (+) True G532322
TU602832 lncRNA downstream 46813 62869429 ~ 62869862 (+) True G532325
TU602846 lncRNA downstream 65201 62887817 ~ 62888453 (+) True G532338
TU602873 lncRNA downstream 133349 62955965 ~ 62956206 (+) True G532362
TU602743 lncRNA downstream 141083 62963699 ~ 62965692 (+) True LOC110526308
XM_021607143.2 mRNA upstream 78340 62723445 ~ 62742080 (+) True LOC110526307
XM_021607139.2 mRNA upstream 137218 62648128 ~ 62683202 (+) False LOC110526303
XR_005052419.1 mRNA upstream 250453 62568049 ~ 62569967 (+) True LOC118965084
XM_021607128.2 mRNA upstream 328732 62490495 ~ 62491688 (+) True LOC110526300
XM_021607127.2 mRNA upstream 328734 62490082 ~ 62491686 (+) False LOC110526300
XM_036981769.1 mRNA downstream 125502 62948118 ~ 62965825 (+) False LOC110526308
XM_021607149.2 mRNA downstream 183056 63005672 ~ 63015537 (+) False LOC110526311
XM_036981770.1 mRNA downstream 296611 63119227 ~ 63120960 (+) False LOC118965038
XR_005052190.1 mRNA downstream 341236 63163852 ~ 63170077 (+) False LOC110526312
XM_036980657.1 mRNA downstream 341249 63163865 ~ 63175505 (+) True LOC110526312
TU601786 other upstream 668202 62149773 ~ 62152218 (+) True G531406
TU601664 other upstream 840893 61971736 ~ 61979527 (+) True LOC110526282
TU598912 other upstream 3048336 59771708 ~ 59772084 (+) True G528653
TU597653 other upstream 4041403 58778723 ~ 58779017 (+) True G527450
TU596824 other upstream 4448452 58318920 ~ 58371968 (+) True LOC110526933
TU602899 other downstream 189642 63012258 ~ 63014986 (+) False LOC110526311
TU602734 other downstream 210315 63032931 ~ 63198734 (+) False G532237
TU603025 other downstream 485917 63308533 ~ 63343755 (+) True G532489
TU603064 other downstream 515620 63338236 ~ 63339498 (+) False LOC100750227
TU605157 other downstream 1946531 64769147 ~ 64776336 (+) False LOC110526344

Expression Profile