RNA id: TU602734



Basic Information


Item Value
RNA id TU602734
length 1087
RNA type TUCP
GC content 0.53
exon number 4
gene id G532237
representative False

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 63032931 ~ 63198734 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AGGTGAAACATCAGAAACCAAATTTATTGAAAATCCTTTGAAACCAACATCGGAAGACACACTCAATGAAAGTCATAACTTGAGAGAGTTTGACAAGATCAAGTCAGAATATGACTTTGTTAGCAAAGGCATAATGGAGATTATGAGCCCCGTGGAGGCTACAACTGCCTCGAATACATCTCAGACATTACACTGGAGCGGAGACTGGCTGATGTCTCACTGTCGCCCCTGAGGACACTGTTGATCCAAGGCATGTAGGCAGAGAGCTTCATGTAGACAGCGTATTTCTCCACGGCACAGGTCTTATCGAAGGACAGGATCCCTGCAGCATACACTCGGCCGTCTTTGGGGTCCTGGACTGCCAGGGCACCGCCTgcgtccccaaagcacacattcTCCTGGTACTTGCTGGCTCCAGTACAGAACATGTTGTCATCTACGGTTGGAGTGCTGCTCAGTACTTGGCCACCAGGGTTGTACTCTGCCTTACAGGAGCTATGCGATGCCACAGGCAATACCAGGTGTTTCAGTGACTTAGCGGGGGTGAAGAAGACCCCCCAACCCCAGCCTGTGATGATGCCTTTCTCCTGGGCTGCCTCAGCCAGGTGTTTCAGTGACTTAGCGGGGGTGAAGAAGACCCCCCAACCCCAGCCTGTGATGATGCCTTTCTCCTGGGCTGCCTCAGCCAGGTCCTGGCCCCTCTCAGGCAGAGGGATGGGCATCACAGCCTCGCTCAGGGTGAATGGCTCCTTCAGCTGAATCAGAGCCAGGTCGTTGTCCCAGTCTGATACGTTCTGGAAGCCTGGGTGCGATGCCTTTCTCCTGGGCTGCCTCAGCCAGGTCCTGGCCCCTCTCAGGCAGAGGGATGGGCATCACAGCCTCGCTCAGGGTGAATGGCTCCTTCAGCTGAATCAGAGCCAGGTCGTTGTCCCCAGTCTGATACGTTCTGGAAGCCTGGGTGCAGAACCACCTAGAAGGGGGAAGGGAATAATTCATAGGACCTCTTTTTGATGATCTCTTTGTGCTCTAACTACCTGTAAGACTGAACGTGATGATGTAGTGAAGAGGATGCAGATAATACCACTTC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU602892 lncRNA upstream 36053 62996542 ~ 62996878 (+) True G532381
TU602885 lncRNA upstream 48743 62983938 ~ 62984188 (+) True G532374
TU602883 lncRNA upstream 51096 62981613 ~ 62981835 (+) True G532372
TU602881 lncRNA upstream 54444 62978271 ~ 62978487 (+) True G532370
TU602743 lncRNA upstream 67239 62963699 ~ 62965692 (+) True LOC110526308
TU602749 lncRNA downstream 20728 63219462 ~ 63228632 (+) True G532248
TU602752 lncRNA downstream 22437 63221171 ~ 63225329 (+) True G532251
TU602740 lncRNA downstream 23284 63222018 ~ 63226987 (+) True G532240
TU602974 lncRNA downstream 41270 63240004 ~ 63240389 (+) True G532447
TU602975 lncRNA downstream 42447 63241181 ~ 63241419 (+) True G532448
XM_021607149.2 mRNA upstream 17394 63005672 ~ 63015537 (+) False LOC110526311
XM_036981769.1 mRNA upstream 67106 62948118 ~ 62965825 (+) False LOC110526308
XM_036980649.1 mRNA upstream 85739 62752706 ~ 62947192 (+) False LOC110526939
XM_036981771.1 mRNA downstream 2668 63201402 ~ 63210821 (+) True LOC110526940
XM_021607163.2 mRNA downstream 43652 63242386 ~ 63243598 (+) False mcee
XM_021607162.2 mRNA downstream 43665 63242399 ~ 63243598 (+) False mcee
XM_021607165.2 mRNA downstream 43709 63242443 ~ 63243598 (+) False mcee
XM_021607164.2 mRNA downstream 43936 63242670 ~ 63243598 (+) True mcee
TU602899 other upstream 17945 63012258 ~ 63014986 (+) False LOC110526311
TU602760 other upstream 210315 62820420 ~ 62822616 (+) True G532259
TU601786 other upstream 880713 62149773 ~ 62152218 (+) True G531406
TU601664 other upstream 1053404 61971736 ~ 61979527 (+) True LOC110526282
TU598912 other upstream 3260847 59771708 ~ 59772084 (+) True G528653
TU603025 other downstream 109799 63308533 ~ 63343755 (+) True G532489
TU603064 other downstream 139502 63338236 ~ 63339498 (+) False LOC100750227
TU605157 other downstream 1570413 64769147 ~ 64776336 (+) False LOC110526344
TU605171 other downstream 1591588 64790322 ~ 64847104 (+) True G534453
TU605418 other downstream 1914546 65113280 ~ 65117956 (+) True G534653

Expression Profile