RNA id: TU602912


Basic Information

Item Value
RNA id TU602912
length 1916
lncRNA type read_through
GC content 0.44
exon number 2
gene id G532399
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 63049950 ~ 63099165 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGTCATTTCAGAAAATTAGTCAAATTAACCGCATGGGTGAGCTTACTTTCACTCAGAGCACAATTTAGTTACATGGGGAGTTTTTCTCCTGGAATTTCTATTTTGCATCAGGCTATGTCACTACAtgctggcccaggagtgtgaaggtgaacggaaaggctctggagcaacgaaccgcccttgctgtctctgcatggccggttcccctctcaccactgggattctctgcctctaaccctattacaggggctgagtcactggcttactggtgctctttcatgccatccctaggaggggtgcgtcacttgagtgggttgagtcactgacgtgatcttcctgtctgggttggagccccccccttgggttgtgccgtggcggagatatttgtgggctatactcggccttgtctcaggatggtaagttggtggttgaagatatccctctggtggtgtgggggctgtgctttggcaaagtgggtggggttatatccttatatccttcctgtcatcggatggggccacagtctgtggtcggatttaccaaatggagggagagctttgtacacatctctgtgtgtggagtacaggtgatctagatttttttctccctctggttgcacatttaacatgttgatagaaatttggtagaactgatttaagtttccctgcattaaagtctcctcccactaggagcgtcgcctctgggtgagtggtttcctgtttgcttatttccttatacagctgactgagtacCAGCTTTGTGAAATCATGTGTTTTCAACTTGGCTgttgacagagggagaaagaacaggtagcctagtagagTAAAGTTGAGTAAACAAGTTGTCTGTCCTTTTGCCATGCTTCTTGGCTCAACATTAGGAAAAGTCCAGCCTTGCAACTAAAGAATTTGCTGGTGTTGGGAAAATAAATTGTAGTATTATGTGACTTTCTTCCACCGGGAAATCTGATGTATTCAATTCTGAGTTtgaatcccaatattacactttatacacGTCATAGAATACtgaatataacaaaaccgttagACATAGAAACTCCGGATTTTctgtataaaaaaaatctaataatgtTGATAAATTATTAAATTATGAAAAATAAGAATTTCACTCCACCCGTGAGGCCACTAGATAATTTGACTGCAGGACAGGGCTACTACCACATCCCAGTTGAAAGCACCTTCTGACATGTATCAGTGTGCGATCTCATTCTTATGGCCACTCGTAGGAGTGGAGTAGTTCGTTCATAGCCATCCTCCCTTTTTTCTGTGCAAAATTAGTTTGCTATAGTATCGATGAAATGTAAAATGAGAGGCTTTCATTGACAAACAGAAAAAAGCTGACGTGCTTTGTAGCAAATAGGTGAGCGTACAGCGTACAGTATGTTGTCGTGTACTTATATTACTGTAGATCTAGGGATGGATACTGGCTGAACTGTATCATGTACCTCATCAGTGTAATTACAACATTTAAAACAGCCATTGTTAATAGGAACTGTGTCAGGGCTAACGAATTAGCAGATTGTCTCTCTGATGGTCTCATTGGTATCATTCATTCATGTTTTTGAAACAGATGGGCAATGACTGATGCAAGGACAGAGGGATGGATGCcatgcttgcctgcctgcctgcttgcttgCTTGCCTGGCACTGTAATGCTGTTGATGTCTCTGAACTGTCATGCTCTTAGTGCCTGATGTTACATAAGACTGGTAAGGTCATTGTGGCTCACTCTCACAACCACTGACTGTCCTTAGGCCTTGTGATTCCAGGCTGGaacctgtgtgttgtgttgggtatCACACTACAGGAAAGGACATGATGTACAGGTACGTGTACAGATAAAAACAGCCATCTGCCAGCAGCCATTTAATTTAGCGttttcacgtgtgtgtgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU602892 lncRNA upstream 53072 62996542 ~ 62996878 (+) True G532381
TU602885 lncRNA upstream 65762 62983938 ~ 62984188 (+) True G532374
TU602883 lncRNA upstream 68115 62981613 ~ 62981835 (+) True G532372
TU602881 lncRNA upstream 71463 62978271 ~ 62978487 (+) True G532370
TU602743 lncRNA upstream 84258 62963699 ~ 62965692 (+) True LOC110526308
TU602744 lncRNA downstream 21623 63120788 ~ 63176699 (+) True LOC118965038
TU602948 lncRNA downstream 89937 63189102 ~ 63190085 (+) True G532430
TU602749 lncRNA downstream 120297 63219462 ~ 63228632 (+) True G532248
TU602752 lncRNA downstream 122006 63221171 ~ 63225329 (+) True G532251
TU602740 lncRNA downstream 122853 63222018 ~ 63226987 (+) True G532240
XM_021607149.2 mRNA upstream 34413 63005672 ~ 63015537 (+) False LOC110526311
XM_036981769.1 mRNA upstream 84125 62948118 ~ 62965825 (+) False LOC110526308
XM_036980650.1 mRNA upstream 102758 62752706 ~ 62947192 (+) False LOC110526939
XM_036981770.1 mRNA downstream 20062 63119227 ~ 63120960 (+) False LOC118965038
XR_005052190.1 mRNA downstream 64687 63163852 ~ 63170077 (+) False LOC110526312
XM_036980657.1 mRNA downstream 64700 63163865 ~ 63175505 (+) True LOC110526312
XM_036981771.1 mRNA downstream 102237 63201402 ~ 63210821 (+) True LOC110526940
XM_021607163.2 mRNA downstream 143221 63242386 ~ 63243598 (+) False mcee
TU602899 other upstream 34964 63012258 ~ 63014986 (+) False LOC110526311
TU602760 other upstream 227334 62820420 ~ 62822616 (+) True G532259
TU601786 other upstream 897732 62149773 ~ 62152218 (+) True G531406
TU601664 other upstream 1070423 61971736 ~ 61979527 (+) True LOC110526282
TU598912 other upstream 3277866 59771708 ~ 59772084 (+) True G528653
TU603025 other downstream 209368 63308533 ~ 63343755 (+) True G532489
TU603064 other downstream 239071 63338236 ~ 63339498 (+) False LOC100750227
TU605157 other downstream 1669982 64769147 ~ 64776336 (+) False LOC110526344
TU605171 other downstream 1691157 64790322 ~ 64847104 (+) True G534453
TU605418 other downstream 2014115 65113280 ~ 65117956 (+) True G534653

Expression Profile