RNA id: TU602930



Basic Information


Item Value
RNA id TU602930
length 296
lncRNA type read_through
GC content 0.50
exon number 2
gene id G532412
representative True

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 63097382 ~ 63151411 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


accaggctatgtggggtggccagtcctcttctggctgtgccgggtggagattataacaaaacatggtcaagatgttcaaatgttcataaatgaccagcatggtcgaataataataaggcagaatagttgaaactggagcagcagcacagccaggtggactggggacagcaaggagtcatcatgtcaggtagtcctggggcatggtcctagggctcaggtcctccgagagaaagagagaaggagagaattagagaacgcacacttagattcacacaggacaccgaataggacaggag

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU602730 lncRNA upstream 6892 63032931 ~ 63090490 (+) False G532237
TU602731 lncRNA upstream 6892 63032931 ~ 63090490 (+) False G532237
TU602901 lncRNA upstream 28391 63056802 ~ 63068991 (+) True LOC110526311
TU602892 lncRNA upstream 100504 62996542 ~ 62996878 (+) True G532381
TU602885 lncRNA upstream 113194 62983938 ~ 62984188 (+) True G532374
TU602948 lncRNA downstream 37691 63189102 ~ 63190085 (+) True G532430
TU602749 lncRNA downstream 68051 63219462 ~ 63228632 (+) True G532248
TU602752 lncRNA downstream 69760 63221171 ~ 63225329 (+) True G532251
TU602740 lncRNA downstream 70607 63222018 ~ 63226987 (+) True G532240
TU602974 lncRNA downstream 88593 63240004 ~ 63240389 (+) True G532447
XM_021607149.2 mRNA upstream 81845 63005672 ~ 63015537 (+) False LOC110526311
XM_036981769.1 mRNA upstream 131557 62948118 ~ 62965825 (+) False LOC110526308
XM_036980650.1 mRNA upstream 150190 62752706 ~ 62947192 (+) False LOC110526939
XR_005052190.1 mRNA downstream 12441 63163852 ~ 63170077 (+) False LOC110526312
XM_036980657.1 mRNA downstream 12454 63163865 ~ 63175505 (+) True LOC110526312
XM_036981771.1 mRNA downstream 49991 63201402 ~ 63210821 (+) True LOC110526940
XM_021607163.2 mRNA downstream 90975 63242386 ~ 63243598 (+) False mcee
XM_021607162.2 mRNA downstream 90988 63242399 ~ 63243598 (+) False mcee
TU602899 other upstream 82396 63012258 ~ 63014986 (+) False LOC110526311
TU602760 other upstream 274766 62820420 ~ 62822616 (+) True G532259
TU601786 other upstream 945164 62149773 ~ 62152218 (+) True G531406
TU601664 other upstream 1117855 61971736 ~ 61979527 (+) True LOC110526282
TU598912 other upstream 3325298 59771708 ~ 59772084 (+) True G528653
TU603025 other downstream 157122 63308533 ~ 63343755 (+) True G532489
TU603064 other downstream 186825 63338236 ~ 63339498 (+) False LOC100750227
TU605157 other downstream 1617736 64769147 ~ 64776336 (+) False LOC110526344
TU605171 other downstream 1638911 64790322 ~ 64847104 (+) True G534453
TU605418 other downstream 1961869 65113280 ~ 65117956 (+) True G534653

Expression Profile