RNA id: TU602749


Basic Information

Item Value
RNA id TU602749
length 1646
lncRNA type read_through
GC content 0.45
exon number 3
gene id G532248
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 63219462 ~ 63228632 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tttgattattaaccaaaTATTGTCTCATACTGTGAGTCAAGGGGATAGGGGACAACCATAACAACGAGAAAGATTGAGAGGTTACATAGAGTACTAGTTACTATCAGGAAGGCCATTTTATATCCAAAGTGCTCATATATAGATGACACCTATATGGTCCAGTTGATTGGACGTAGTCGATAATAAAGTGTACTGCAAAATGTACTGTCAAATAGCCCTCTAAAGGGCCTTCACCTTCAGTATGCCAAACAGACACGTGTGTTTGAATGAAGTACAGTTCATGTTAACATCAGTAAAACTACACAGTGAGGAGAGTTTCACTGCAAAGGGTGCCAATCCAAATATTTAAACATTTCCTGTAACTGCGGTGACTGACAACACAGCATGATGGGATACTGGAGGATTAGGTCTTCTTCTTCAGATCCTCAAAGCGCCGTGACAGGTCATCAAAGTCGATGTCATCAGAGCTCGCAGTGTTTCGTCCAACTCCAAAGGAGGAAGTGGGAAGCGTGTCGGGAACTGAGGGCAGCTCAGGGAGGGCGTTGTTATCGTAGATCTGGGATGAAGGCCCGGGGCCTGTTACAGACTCGTAGGTAGGGGGGCAGCTGGGCAGCTCAGGGGGGTGTCCTCCTCTCATTGGAGGCTGGAAGTTGTTAAAGGCATCATATGTGCCAACAGAGGGGCCGTTGAACCCTATGGGGCCGGGAATCTAAAGAAAAAAAAACCgaatgtaaataaaaacacatttataaaTCAACATCTCTATATTTATTACAGCTGGAATACTTAATGGTGAAACAGCCATGTCTGTTTGAGATATTACGACAACGAAGTTACTTCAAACAACTAACACTGTTTTCTTCTCTGACATCGCACACGCGACAGAAAAGCACATACGTAATGCACTTTTTTCCCATGCTGCATGAACAATAGCGGTCAGTGGCACCActtttgggagaaaaaaaaaattcttACTGCTCCTTTGTGTGTTGGGTAGCTGAACGCTGATGGGGGGCCCATGGGCATAGGCATAGCTCCAGCGGTGAAGCCGCCGCCGCCGCCACCACCACGCTTCCTGAAGTCAGAGTCCACGTCTATGAGGTCAGCCTCTTCGCCTTTACACACCTCCGGCTGCGTGGGTGGgtacaaataaaatgtaattggtCACATGCATcgtaaacaggtgtagactaaaagGACTGCATAATCAATCCAACGTCTGCATTGGCCGTGCAGCGTTTATGGTGatatggcctctgcagaagtcggTGCATTCATACTTTCTCGCGCGCAGCAGAGCAGTTGTCAAGGTAGTGAGTTTGcatttatacaggacctccctccctcacataccgtcaaccaatcatgtcaatgcggtgCTAAACAGAGCCCTttgcattgttacaaaatttgagGGGGCTCCGCAATGAGCGTCACACCCTCCATACGAAGCCTCTGACCACATTTTCAGAtgaagcataaattggctttaacagtgaaatgcttacttatgggcctttcccaacaatgcagagagaaagaaaacggAAAAATAATAACACGTAATCAAAGTAATAATGCATACACAATGAGTactgataacatggctatatacacggatTACCAGTACTGGGCCaatgtaattg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU602727 lncRNA upstream 20728 63032931 ~ 63198734 (+) False G532237
TU602725 lncRNA upstream 20728 63079395 ~ 63198734 (+) False G532237
TU602948 lncRNA upstream 29377 63189102 ~ 63190085 (+) True G532430
TU602744 lncRNA upstream 42763 63120788 ~ 63176699 (+) True LOC118965038
TU602930 lncRNA upstream 68051 63097382 ~ 63151411 (+) True G532412
TU602974 lncRNA downstream 11372 63240004 ~ 63240389 (+) True G532447
TU602975 lncRNA downstream 12549 63241181 ~ 63241419 (+) True G532448
TU602976 lncRNA downstream 12975 63241607 ~ 63241934 (+) True G532449
TU602924 lncRNA downstream 16238 63244870 ~ 63245239 (+) True G532407
TU602918 lncRNA downstream 16824 63245456 ~ 63246613 (+) False G532403
XM_036981771.1 mRNA upstream 8641 63201402 ~ 63210821 (+) True LOC110526940
XM_036980657.1 mRNA upstream 43957 63163865 ~ 63175505 (+) True LOC110526312
XR_005052190.1 mRNA upstream 49385 63163852 ~ 63170077 (+) False LOC110526312
XM_036981770.1 mRNA upstream 98502 63119227 ~ 63120960 (+) False LOC118965038
XM_021607149.2 mRNA upstream 203925 63005672 ~ 63015537 (+) False LOC110526311
XM_021607163.2 mRNA downstream 13754 63242386 ~ 63243598 (+) False mcee
XM_021607162.2 mRNA downstream 13767 63242399 ~ 63243598 (+) False mcee
XM_021607165.2 mRNA downstream 13811 63242443 ~ 63243598 (+) False mcee
XM_021607164.2 mRNA downstream 14038 63242670 ~ 63243598 (+) True mcee
XM_021607169.2 mRNA downstream 21960 63250592 ~ 63323571 (+) False apba2b
TU602734 other upstream 20728 63032931 ~ 63198734 (+) False G532237
TU602899 other upstream 204476 63012258 ~ 63014986 (+) False LOC110526311
TU602760 other upstream 396846 62820420 ~ 62822616 (+) True G532259
TU601786 other upstream 1067244 62149773 ~ 62152218 (+) True G531406
TU601664 other upstream 1239935 61971736 ~ 61979527 (+) True LOC110526282
TU603025 other downstream 79901 63308533 ~ 63343755 (+) True G532489
TU603064 other downstream 109604 63338236 ~ 63339498 (+) False LOC100750227
TU605157 other downstream 1540515 64769147 ~ 64776336 (+) False LOC110526344
TU605171 other downstream 1561690 64790322 ~ 64847104 (+) True G534453
TU605418 other downstream 1884648 65113280 ~ 65117956 (+) True G534653

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
mexican tetra (Astyanax mexicanus) TU349132 False 1787 lncRNA 0.42 4 NW_019171552.1 106094 ~ 168379 (-)