RNA id: TU602919


Basic Information

Item Value
RNA id TU602919
length 1478
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G532403
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 63245456 ~ 63246971 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggtcgcaaagttcaagggggccgaatactttcgcaaggcactgtatgctgagcacttgttggctgcttttccttcactctgctgtccgactcatcccaaaccatctcaatttggttgaggtagggagattgtggaggccaggtcatctgatgcaacactccatcattctccttcttgttAAATTTGCCCTTatacatcctggaggtgtgttgagtcattgtcctgttggaaaaacaaatgatactctcactaagcccaaaccagatgtgatgttgtattgttgcagaatgctgtggcagccatgctggttaattctaaataaatcacagtgtcaccagcaaagcacccccacactataacacctcctcctccatgctttactgtgggaaatacacatgcggagatcatccgttcacccacaccgcgtctcacaaagacatggcggttggaaccaaaaatctccaatttggactcgagaccaaaggacaaatttccacctgtctaatgtccattgctctggttttttggcccaagcaagtctcttcttcttggtgtcctttagtagtggtttctttgcagcaattcgaccatgaaggcctgattcacacagtctcctctgaacagttgatgttgagatgtgtctgttacttcaactctgaagcatttctttgagctgcaatttctgaggctggtaactttaatgaacttatcctctgcagcagaggtaactctgggtcttccattcctgtggcggtcctcatgagagccagtttcatcatatcgctAGATGGTTTTTGCGGCTGCACTTGGAACAAACGTTCAAAGTTcatgaaatgttccgtattgactgaccttcatgtcttgatgtttctctttgcttttttgagctgttcttgcaataatatggacttggtcatttaccaaataaggctatcttctgtatacccccctaccttgtcacaacacaactgattgggtcAAACGCTttatgaaggaaagaaattccacaaatgaacttttatgaGGGCACAcccgttaattgaaatgcatttgagtgcataaaatatagtttgatttgtttaacactttttgtagttactacatgattccatatgtgttagttcatagttttgatgtcttcagtattattctataatgtagaaaatagtcaaaaataaagaaaaacccttgaatgagtaggtgttctgaaacttttgaccggtagtgtattggTTTGTTTTCCtttaaaaataaaagaaaaagCTTTATCTGCCTTAAAACGAAGTGTCTATTTGCCTCTGCTGTGAATAAATTCTATGATCGACTCTAAGCACTTATGGTGAGTAAATTCACATGTATTAATTCATTTTCACGTGTACATAGATAAATGTTTTTATATGAAATAACTTATTTTCACACCGATTTAAACAGAGTTGCTGTGGAAATATTTATTTGGAGAGAATTCAATAATCATGCAC

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU602924 lncRNA upstream 255 63244870 ~ 63245239 (+) True G532407
TU602976 lncRNA upstream 3560 63241607 ~ 63241934 (+) True G532449
TU602975 lncRNA upstream 4075 63241181 ~ 63241419 (+) True G532448
TU602974 lncRNA upstream 5105 63240004 ~ 63240389 (+) True G532447
TU602740 lncRNA upstream 18507 63222018 ~ 63226987 (+) True G532240
TU602927 lncRNA downstream 298 63247269 ~ 63247888 (+) True G532410
TU602926 lncRNA downstream 1055 63248026 ~ 63249444 (+) True G532409
TU603070 lncRNA downstream 98216 63345187 ~ 63345468 (+) True G532506
TU603083 lncRNA downstream 114872 63361843 ~ 63362056 (+) True G532519
TU603052 lncRNA downstream 218104 63465075 ~ 63549030 (+) False LOC100750227
XM_021607163.2 mRNA upstream 1896 63242386 ~ 63243598 (+) False mcee
XM_021607162.2 mRNA upstream 1896 63242399 ~ 63243598 (+) False mcee
XM_021607165.2 mRNA upstream 1896 63242443 ~ 63243598 (+) False mcee
XM_021607164.2 mRNA upstream 1896 63242670 ~ 63243598 (+) True mcee
XM_036981771.1 mRNA upstream 34673 63201402 ~ 63210821 (+) True LOC110526940
XM_021607169.2 mRNA downstream 3621 63250592 ~ 63323571 (+) False apba2b
XM_036980661.1 mRNA downstream 3623 63250594 ~ 63323571 (+) False apba2b
XM_021607170.2 mRNA downstream 48782 63295753 ~ 63323571 (+) True apba2b
XM_036980662.1 mRNA downstream 91558 63338529 ~ 63527846 (+) False LOC100750227
XM_036980663.1 mRNA downstream 91558 63338529 ~ 63527846 (+) False LOC100750227
TU602734 other upstream 46760 63032931 ~ 63198734 (+) False G532237
TU602899 other upstream 230508 63012258 ~ 63014986 (+) False LOC110526311
TU602760 other upstream 422878 62820420 ~ 62822616 (+) True G532259
TU601786 other upstream 1093276 62149773 ~ 62152218 (+) True G531406
TU601664 other upstream 1265967 61971736 ~ 61979527 (+) True LOC110526282
TU603025 other downstream 61562 63308533 ~ 63343755 (+) True G532489
TU603064 other downstream 91265 63338236 ~ 63339498 (+) False LOC100750227
TU605157 other downstream 1522176 64769147 ~ 64776336 (+) False LOC110526344
TU605171 other downstream 1543351 64790322 ~ 64847104 (+) True G534453
TU605418 other downstream 1866309 65113280 ~ 65117956 (+) True G534653

Expression Profile