RNA id: TU603478


Basic Information

Item Value
RNA id TU603478
length 1132
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G532866
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 63245496 ~ 63246627 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcaaaactatgaactaacacatatggaatcatgtagtaactacaaaaagtgttaaacaaatcaaactatattttatgcactcaaatgcatttcaattaacgggTGTGCCCtcataaaagttcatttgtggaatttctttccttcataaAGCGTTTgacccaatcagttgtgttgtgacaaggtaggggggtatacagaagatagccttatttggtaaatgaccaagtccatattattgcaagaacagctcaaaaaagcaaagagaaacatcaagacatgaaggtcagtcaatacggaacatttcatgAACTTTGAACGTTTGTTCCAAGTGCAGCCGCAAAAACCATCTagcgatatgatgaaactggctctcatgaggaccgccacaggaatggaagacccagagttacctctgctgcagaggataagttcattaaagttaccagcctcagaaattgcagctcaaagaaatgcttcagagttgaagtaacagacacatctcaacatcaactgttcagaggagactgtgtgaatcaggccttcatggtcgaattgctgcaaagaaaccactactaaaggacaccaagaagaagagacttgcttgggccaaaaaaccagagcaatggacattagacaggtggaaatttgtcctttggtctcgagtccaaattggagatttttggttccaaccgccatgtctttgtgagacgcggtgtgggtgaacggatgatctccgcatgtgtatttcccacagtaaagcatggaggaggaggtgttatagtgtgggggtgctttgctggtgacactgtgatttatttagaattaaccagcatggctgccacagcattctgcaacaatacaacatcacatctggtttgggcttagtgagagtatcatttgtttttccaacaggacaatgactcaacacacctccaggatgtatAAGGGCAAATTTaacaagaaggagaatgatggagtgttgcatcagatgacctggcctccacaatctccctacctcaaccaaattgagatggtttgggatgagtcggacagcagagtgaaggaaaagcagccaacaagtgctcagcatacagtgccttgcgaaagtattcggcccccttgaactttgcga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU603482 lncRNA downstream 270 63244870 ~ 63245226 (-) True G532870
TU603477 lncRNA downstream 18653 63222010 ~ 63226843 (-) True G532865
TU603511 lncRNA downstream 69511 63173939 ~ 63175985 (-) True G532899
TU603483 lncRNA downstream 105157 63080820 ~ 63140339 (-) True G532871
TU603498 lncRNA downstream 236049 63009166 ~ 63009447 (-) True G532886
TU603535 lncRNA upstream 1675 63248302 ~ 63249004 (-) True G532923
TU603536 lncRNA upstream 2532 63249159 ~ 63249467 (-) True G532924
TU603589 lncRNA upstream 57459 63304086 ~ 63304969 (-) True G532970
TU603593 lncRNA upstream 62708 63309335 ~ 63309812 (-) True G532974
TU603545 lncRNA upstream 76207 63322834 ~ 63327180 (-) True G532932
LOC110526941 mRNA downstream 4843 63235956 ~ 63240653 (-) True LOC110526941
XM_036980659.1 mRNA downstream 10213 63224573 ~ 63235283 (-) True LOC110526314
XM_036980658.1 mRNA downstream 10271 63224573 ~ 63235225 (-) False LOC110526314
XM_036980660.1 mRNA downstream 10271 63224573 ~ 63235225 (-) False LOC110526314
XR_005052191.1 mRNA downstream 21334 63219436 ~ 63224162 (-) True LOC110526317
XM_021607171.2 mRNA upstream 79187 63325814 ~ 63330232 (-) True LOC110526320
XM_021604992.2 mRNA upstream 88289 63334916 ~ 63337941 (-) True terb2
XM_021607200.2 mRNA upstream 518033 63764660 ~ 63773065 (-) False cilp
XM_036980686.1 mRNA upstream 518033 63764660 ~ 63773065 (-) True cilp
XM_021607201.2 mRNA upstream 577260 63823887 ~ 63944930 (-) False igdcc3
TU603463 other downstream 255218 62985529 ~ 62990278 (-) False LOC110526310
TU603357 other downstream 390489 62822905 ~ 62855007 (-) True G532766
TU603354 other downstream 392679 62851696 ~ 62852817 (-) True G532763
TU602531 other downstream 687097 62514123 ~ 62558399 (-) True LOC110526302
TU598719 other downstream 3548533 59528320 ~ 59696963 (-) False znf536
TU604146 other upstream 577272 63823899 ~ 63825525 (-) False igdcc3
TU604906 other upstream 1251826 64498453 ~ 64499614 (-) True G534201
TU605061 other upstream 1332171 64578798 ~ 64614796 (-) True G534349
TU605344 other upstream 1608868 64855495 ~ 64885532 (-) True G534603
TU606664 other upstream 2377362 65623989 ~ 65625972 (-) True LOC110526365

Expression Profile