RNA id: TU602926


Basic Information

Item Value
RNA id TU602926
length 1419
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G532409
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 63248026 ~ 63249444 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctacaatgtagaaaatagtataaagaaaaacccttgaataagtaggtgttctaaaacttttgactggtggtGTATCTtggttacataagtattcaaccctctgACACAGATAACagctgtgagtccttctgggtAAGGCTCCAAGAGCTTTGttcacctggattgtacaatatttgcacattattctttaaaagaggattcaagctctgtcaagatgttttcatgtcttgccatagattttcaagacgatttttAAGTCAACTATAACtgggccactcgggaacattcaatgttgtcttggtaagcaactccagtgtatatttggtcttgtgttttacaTTGTCCTGTTGAATGGTGAATTTGtcacccagtgtctgttggaaagcagattgaatcaggtttccctctaggattttgcctgtgcttagctctattccatttctttttataaaaaaaaaactgtagtcCTTGtcgatgccaccaccatgcttgaaaatatcaaGAGTCGTACTCAGTTGTGttagattttccccaaacataacgctttgtattcaagaTAAAGcgttctttcttttctctctatcAATTAGGTTAattttgtggagtaactacaatgttgtggtttatcctcagttttctcctatcacagacatataagtttgtaactgttttaaagtcaccattggccacaTGGTGAAATACCTctcaggcaactgagttaggaaggactcctgtatctttgtagtgacttggtGCATTGATACGCCATCCAATTGTGTAATTAATCACTTCACCATGCTCATCTGCCAATGGGTGCActtctttgcgaagcattggaaaatctccctggtctttggttgaatctgtttttgaaattcactgctcgactgagggaccttacagataatagTATGGATGTGGTTAAAAAATCATAttaaatactattattgcacacagtgagtctgTGCAACtttttatgtgacttgttaagcaaagttttactcctgaacttatttaagcatgccataacaaagggattgaatacttattgactaaagacatctcagcttttcatttttaattcatttgtaaaaatgtctacaaacataattctactttgactTTGACACACAGTACCACATAATCTCAATTTAATGTGTTTTACATTccggctgtaaaacaacaaataatgtggaaaaagtcaaggggtgtgaatactttctgaaggtactgtaattAATTCATAACTTGCCACTGGAGGCAAAGATTCATGGATTTTATTGCGTGATATGAAGTACGATGGTTTCCAATCTCGTCCTCTTTTTGTTGTGTAATGTCGTTTTGCTAAATATGATCACTCAATGAGCTGCCCACTGATGCGTTAGGAAGAATTACTGGCTTATACATACAATCTCTCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU602927 lncRNA upstream 138 63247269 ~ 63247888 (+) True G532410
TU602919 lncRNA upstream 1055 63245494 ~ 63246971 (+) True G532403
TU602918 lncRNA upstream 1413 63245456 ~ 63246613 (+) False G532403
TU602917 lncRNA upstream 1413 63245494 ~ 63246613 (+) False G532403
TU602924 lncRNA upstream 2787 63244870 ~ 63245239 (+) True G532407
TU603070 lncRNA downstream 95743 63345187 ~ 63345468 (+) True G532506
TU603083 lncRNA downstream 112399 63361843 ~ 63362056 (+) True G532519
TU603052 lncRNA downstream 215631 63465075 ~ 63549030 (+) False LOC100750227
TU603058 lncRNA downstream 270721 63520165 ~ 63549030 (+) True LOC100750227
TU603187 lncRNA downstream 424533 63673977 ~ 63674925 (+) True LOC110526321
XM_021607163.2 mRNA upstream 4428 63242386 ~ 63243598 (+) False mcee
XM_021607162.2 mRNA upstream 4428 63242399 ~ 63243598 (+) False mcee
XM_021607165.2 mRNA upstream 4428 63242443 ~ 63243598 (+) False mcee
XM_021607164.2 mRNA upstream 4428 63242670 ~ 63243598 (+) True mcee
XM_036981771.1 mRNA upstream 37205 63201402 ~ 63210821 (+) True LOC110526940
XM_021607169.2 mRNA downstream 1148 63250592 ~ 63323571 (+) False apba2b
XM_036980661.1 mRNA downstream 1150 63250594 ~ 63323571 (+) False apba2b
XM_021607170.2 mRNA downstream 46309 63295753 ~ 63323571 (+) True apba2b
XM_036980662.1 mRNA downstream 89085 63338529 ~ 63527846 (+) False LOC100750227
XM_036980663.1 mRNA downstream 89085 63338529 ~ 63527846 (+) False LOC100750227
TU602734 other upstream 49292 63032931 ~ 63198734 (+) False G532237
TU602899 other upstream 233040 63012258 ~ 63014986 (+) False LOC110526311
TU602760 other upstream 425410 62820420 ~ 62822616 (+) True G532259
TU601786 other upstream 1095808 62149773 ~ 62152218 (+) True G531406
TU601664 other upstream 1268499 61971736 ~ 61979527 (+) True LOC110526282
TU603025 other downstream 59089 63308533 ~ 63343755 (+) True G532489
TU603064 other downstream 88792 63338236 ~ 63339498 (+) False LOC100750227
TU605157 other downstream 1519703 64769147 ~ 64776336 (+) False LOC110526344
TU605171 other downstream 1540878 64790322 ~ 64847104 (+) True G534453
TU605418 other downstream 1863836 65113280 ~ 65117956 (+) True G534653

Expression Profile