RNA id: TCONS_00033391


Basic Information

Item Value
RNA id TCONS_00033391
length 611
lncRNA type inter_gene
GC content 0.45
exon number 5
gene id XLOC_016714
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 41162103 ~ 41447891 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACATGGCATTTATGACTCAGGTGATTGGTTGAATAAGTGTGCACTTATGAGCAAAGCTGGCACATTTCAAATCACCAAGGCCTTGTGCCAGCTAAGTAACAACTTCCTTTAGATATTTTAGGCTTCTATGAATACCACAAAATGACATCTGTGAAATAAACAAAAGTTAACATCACAAACAACAGTGCAACAGCACCAAAACAAAGATCCTGCATGTCAGATTGCTCTCGATCTGGGAAAATCAAAACAGGTGCAGGCATGTGTACAGTACATCAAACGGAAATCCCCTCTTTACTTCAAATGCATACAAACCTTTCCGTGCAGCTCGCAGGTCCATCTTTCATCTTCAGGAGAGGGAAGTGTGCCAGACCTGTTTGCTGAGGCTCTGCTGGATCTGTACTTCTTGTACAGGTTGCTTCCTGGATGATACAGGCTTGGGCCGTGTGCCATTGCCAGGGCCGTGTCGTTTTGATGATCGCATTACGATGCCGCAGAGCTCGCTGTGTTTAACATGTAATCTGTGTTGCCACGTTGGGCAAATCTCCCTGAACTTTCTTACTTACTGGAGGATAAAAAAGCATCAGCGTTGCATCGCCCGTGTATGGAGATAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033909 lncRNA downstream 38461 41033519 ~ 41123797 (-) False XLOC_016713
TCONS_00032791 lncRNA downstream 357290 40786665 ~ 40804968 (-) True XLOC_016711
TCONS_00033389 lncRNA downstream 392454 40766601 ~ 40769804 (-) False XLOC_016710
TCONS_00033908 lncRNA downstream 392474 40767225 ~ 40769784 (-) True XLOC_016710
TCONS_00033907 lncRNA downstream 450054 40702370 ~ 40712204 (-) True XLOC_016709
TCONS_00033393 lncRNA upstream 56640 41504477 ~ 41512326 (-) False XLOC_016718
TCONS_00033394 lncRNA upstream 304003 41751840 ~ 41772041 (-) False XLOC_016722
TCONS_00033913 lncRNA upstream 304114 41751951 ~ 41771190 (-) True XLOC_016722
TCONS_00032813 lncRNA upstream 524700 41972537 ~ 41983756 (-) True XLOC_016727
TCONS_00032815 lncRNA upstream 579620 42027457 ~ 42030255 (-) False XLOC_016728
TCONS_00032797 mRNA downstream 38245 41123277 ~ 41124013 (-) True XLOC_016713
TCONS_00032796 mRNA downstream 38461 40901997 ~ 41123797 (-) False XLOC_016713
TCONS_00032794 mRNA downstream 271994 40830768 ~ 40890264 (-) False XLOC_016712
TCONS_00032795 mRNA downstream 272254 40832974 ~ 40890004 (-) True XLOC_016712
TCONS_00032792 mRNA downstream 272793 40830768 ~ 40889465 (-) False XLOC_016712
TCONS_00032801 mRNA upstream 56915 41504752 ~ 41518340 (-) True XLOC_016718
TCONS_00032802 mRNA upstream 98434 41546271 ~ 41562868 (-) True XLOC_016719
TCONS_00032803 mRNA upstream 115236 41563073 ~ 41571454 (-) True XLOC_016720
TCONS_00032804 mRNA upstream 129670 41577507 ~ 41620112 (-) False XLOC_016721
TCONS_00032805 mRNA upstream 132952 41580789 ~ 41620112 (-) False XLOC_016721
TCONS_00032788 other downstream 566764 40595375 ~ 40595494 (-) True XLOC_016708
TCONS_00032787 other downstream 617197 40544946 ~ 40545061 (-) True XLOC_016707
TCONS_00032779 other downstream 1092406 40067808 ~ 40069852 (-) False XLOC_016701
TCONS_00032777 other downstream 1135636 39926961 ~ 40026622 (-) False XLOC_016700
TCONS_00032808 other upstream 169370 41617207 ~ 41620112 (-) True XLOC_016721
TCONS_00032811 other upstream 498138 41945975 ~ 41946896 (-) True XLOC_016725
TCONS_00032833 other upstream 924172 42372009 ~ 42375109 (-) True XLOC_016738
TCONS_00032837 other upstream 956224 42404061 ~ 42415788 (-) True XLOC_016740
TCONS_00032848 other upstream 1225013 42672850 ~ 42704933 (-) True XLOC_016744

Expression Profile

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