RNA id: TU604432


Basic Information

Item Value
RNA id TU604432
length 239
lncRNA type inter_gene
GC content 0.69
exon number 1
gene id G533747
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 64183747 ~ 64183985 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtcagccaggggccgcccgagcagctgcccctctgtccagagcagctgtcgcccctctgtcccaagctgctgccgcccctctgtcccgagcagctgtccctctgtcccgagcagctgtccctctgtcccgagcagctgtccctctgtcccgagcagctgtccctctgtcccgagcagctgctatcgcccctctgtcccgagctgctatcgcccctctgtcccgagctgctatcgcccct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU604408 lncRNA upstream 23516 64160012 ~ 64160231 (+) True G533723
TU604383 lncRNA upstream 35921 64147587 ~ 64147826 (+) True G533701
TU604379 lncRNA upstream 37893 64145621 ~ 64145854 (+) True G533697
TU604348 lncRNA upstream 69926 64113364 ~ 64113821 (+) True G533668
TU604266 lncRNA upstream 135065 64048451 ~ 64048682 (+) True G533586
TU604433 lncRNA downstream 1726 64185711 ~ 64185919 (+) True G533748
TU604437 lncRNA downstream 6805 64190790 ~ 64197078 (+) True G533752
TU604446 lncRNA downstream 23718 64207703 ~ 64207909 (+) True G533761
TU604447 lncRNA downstream 24157 64208142 ~ 64208400 (+) True G533762
TU604451 lncRNA downstream 26530 64210515 ~ 64211049 (+) True G533766
XM_021607205.2 mRNA upstream 151455 64026687 ~ 64032292 (+) False LOC110526331
XM_021607203.2 mRNA upstream 151455 64026691 ~ 64032292 (+) True LOC110526331
XM_021607204.2 mRNA upstream 152214 64026685 ~ 64031533 (+) False LOC110526331
XM_021607199.2 mRNA upstream 420860 63758243 ~ 63762887 (+) True LOC110526326
XM_036980685.1 mRNA upstream 426509 63730434 ~ 63757238 (+) False strc1
XM_021607209.2 mRNA downstream 34189 64218174 ~ 64277755 (+) False insyn1
XM_021607210.2 mRNA downstream 34189 64218174 ~ 64277755 (+) False insyn1
XM_021607215.2 mRNA downstream 310834 64494819 ~ 64499616 (+) False LOC110526337
XM_021607216.2 mRNA downstream 310892 64494877 ~ 64499616 (+) False LOC110526337
XM_021607217.2 mRNA downstream 310930 64494915 ~ 64499616 (+) False LOC110526337
TU603025 other upstream 839992 63308533 ~ 63343755 (+) True G532489
TU603064 other upstream 844249 63338236 ~ 63339498 (+) False LOC100750227
TU602734 other upstream 985013 63032931 ~ 63198734 (+) False G532237
TU602899 other upstream 1168761 63012258 ~ 63014986 (+) False LOC110526311
TU602760 other upstream 1361131 62820420 ~ 62822616 (+) True G532259
TU605157 other downstream 585162 64769147 ~ 64776336 (+) False LOC110526344
TU605171 other downstream 606337 64790322 ~ 64847104 (+) True G534453
TU605418 other downstream 929295 65113280 ~ 65117956 (+) True G534653
TU605427 other downstream 972524 65156509 ~ 65161330 (+) True LOC110526356
TU605959 other downstream 1663638 65847623 ~ 65849441 (+) True G535150

Expression Profile