RNA id: TU604645


Basic Information

Item Value
RNA id TU604645
length 2969
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G533953
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 64504106 ~ 64507098 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTCTACTTTATTTAGGTTGAAACTTGATGCCTCTATGTCCCCATACAATACATTCAGTATATACATTTGGCAATGAGGGACTGTACAGATATGTTATAGTAGTGAATACATACACGGGAAGAAAATGTACACAAAAGCATTAAAACCACTTGACCTCAGTGGCTAGAGAGACACCGAGTAAGTCTATGGCTGATGGCAACACGCACACACTTCTTTGAGGGTGAGAAGGACTAGTCCAGGTTCCCAGAGAGACATAATGTGAAGAGTGAGTCTGCTGATTGAGACAAAGCTCCTTCTCTGCCTTCCAGAAtcacctcccttcctccctcctagTCAGGCGAGGGGACTTCCTCCGTGCAGCGTGGACAACGTACGTGGGACCTTGCCTACAGTAACATGCATCTGTCAGCAGCCCTGAATAAAGATCCTCCTCTTCTTTATGTTTCATCTCTGCCACACAGGAACATTAAgacatatagtgcattcggaaagtatttagaccccttgactttttccaaattttgttacattatagccttattctaaactggattaaatcatttttttccctcatcaaatttacacaataccccataacgacaaagcaaaaacaaatgtagacatttttgcaaattaaaaaaacatgaaaatatcacatttacataagtattttgaCGCGCCACTCGgaactttgttgaagaaccttggCAGAGAatacagtcttgagtcttcttgggtatgacgctacaagcttggtacacctgtatttggggagtttctcccatttttttatgaagatcctctcaagctctgttaggttagATGGGGGGCGTCGCTGCACagtcattttcaggtctctccagagatgtttgatcgggttcaagtccggactctggctgggccactcaaggacattcagagacttgtcccgaagccactcctgcattgtcttggctgtgtgagtcttcgccaaagagttcaatgttgggtttatcagaccaaagaatcttgctTCTTACggtctgagagtctttgggtgccttttggcaaactccaaacgggctgtcatgtgccttttactgaggagtggcttcagtctggccactctaccacaaaggcctgattggttgagtactgtgtagatggttgtccttctgtaaggttctcccatctccacagatgaactctggagctctttcagagtgaccatcgggttcttggtcacctccctgaccaaggctcttctccaccgattgctcagtttggctgggcggcccagctctaggaagagtcttggtggttccaaacttgttccatttaagaatgatggaggccactgtgttcttggggaccttcaacactacagattttttttggtatccttccccagatctgtgccttgacacaatcctgtttcatagctctatggacaattccttcaacctcatggcttggtgtttgctctgacatgcactgtcaactatgggaccttacatagacccGTGTGTGCTttgccaaatcatgtccaaacaattttaTTTACCAcaaatggactccaatcaaggtgttgaaacatcaaggatgatcaatggaaacaggctgcacctgagctcaatttcgagtctcatagcaaagggtctgaaaacggtctgttcattttttataaatgtgcaaaaatgaaaaaacttttcactttgtcattagggggtattgtgtgtagattgttattAATAAAttatttaatccgttttagaacaaggctgtaacgtaacaatttttaacaaaggggtctgaatacacacacacacacacacactcatggccaaaagttgagaatgacacaaatacacATTTCCAAAAAGTTTGCTTCTtcagtgtctagatatttttgtcagatgttactatggaatactgaagtataattacaagcatttcataagtgtcagaCCTTTATTGACtcttacatgaagttgatgcaaagagtcaatatttgcagtgttgacccttctttttaaattctgggccacatcctgactgatggcagcccattcttcagaaattgtgtttttttttgtccacccgcctcttgaggattgaccacaagttctcaaagtgattaaggtctggggagtttcctggccatggacacaAAATATCGATGTGTGGTTCCCCGAGCGACTtcgttatcacttttgccttatggcaaggtgctccatcatgctggaaaaggcattgttcgtcaccaaactgttccaggatggttgggagaagttgctctcggaggatgtgttggtaccattctttattcatggctgtgttcttaggcaaaattgtgagtgagcccactcccttggctgagaagtaaccccacacatgaatggtctcaggatggtTTAcggttggcatgacacaggactgatggtagcgctcaccttgtcttctccggacaagcttttttccggatgccccaaacaatcggaaaggggattcatcagagaaaatgactttaccccagtcctcagcagtccaatccctgtaccttttgcagaatatcagtctgtccctgatgtttttcctggagggaagtggcttctttgctgcccttcttgacaccagtccatcctccaaaagtcttcacctcactgtgcgtgcagatgcactcacacctgcctgctgccattcctgagcaagctctgtactggtggtgccccgagcccgcagctgaatcaactttatgagacagtcctggcgcttgctggactttcttgggtgccctgaagccttctgcAGAAATGCAGTGGAATTTTTTTGGAAGGGATTTAcatggcaaatagggactttgcaattaattgcaattcatctgatcactcttcataacattctgaagtatatgcaaattgccatcatacaaactgaggcagcagactttgtgaaaattaatatttgtcattctcaaaacttttggcca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU604597 lncRNA upstream 87277 64415718 ~ 64416829 (+) True G533907
TU604592 lncRNA upstream 88671 64415108 ~ 64415435 (+) True G533903
TU604586 lncRNA upstream 97245 64404930 ~ 64406861 (+) False G533898
TU604587 lncRNA upstream 97245 64404930 ~ 64406861 (+) True G533898
TU604577 lncRNA upstream 110631 64393161 ~ 64393475 (+) True G533889
TU604685 lncRNA downstream 46766 64553864 ~ 64573072 (+) True G533991
TU604830 lncRNA downstream 250732 64757830 ~ 64758115 (+) True G534128
TU604832 lncRNA downstream 253136 64760234 ~ 64760505 (+) True G534130
TU604826 lncRNA downstream 258401 64765499 ~ 64765678 (+) True LOC110526343
TU605161 lncRNA downstream 266549 64773647 ~ 64774014 (+) True G534445
XM_036980689.1 mRNA upstream 4485 64495035 ~ 64499621 (+) False LOC110526337
XM_036980690.1 mRNA upstream 4485 64495035 ~ 64499621 (+) True LOC110526337
XM_021607215.2 mRNA upstream 4490 64494819 ~ 64499616 (+) False LOC110526337
XM_021607216.2 mRNA upstream 4490 64494877 ~ 64499616 (+) False LOC110526337
XM_021607217.2 mRNA upstream 4490 64494915 ~ 64499616 (+) False LOC110526337
XM_021607229.2 mRNA downstream 245931 64753029 ~ 64765798 (+) False LOC110526343
XM_021607230.2 mRNA downstream 262001 64769099 ~ 64781704 (+) False LOC110526344
XM_036980693.1 mRNA downstream 325526 64832624 ~ 64851098 (+) False chrna5
XM_021607231.2 mRNA downstream 325527 64832625 ~ 64851098 (+) False chrna5
XM_021607232.2 mRNA downstream 325533 64832631 ~ 64851098 (+) True chrna5
TU603025 other upstream 1160351 63308533 ~ 63343755 (+) True G532489
TU603064 other upstream 1164608 63338236 ~ 63339498 (+) False LOC100750227
TU602734 other upstream 1305372 63032931 ~ 63198734 (+) False G532237
TU602899 other upstream 1489120 63012258 ~ 63014986 (+) False LOC110526311
TU602760 other upstream 1681490 62820420 ~ 62822616 (+) True G532259
TU605157 other downstream 262049 64769147 ~ 64776336 (+) False LOC110526344
TU605171 other downstream 283224 64790322 ~ 64847104 (+) True G534453
TU605418 other downstream 606182 65113280 ~ 65117956 (+) True G534653
TU605427 other downstream 649411 65156509 ~ 65161330 (+) True LOC110526356
TU605959 other downstream 1340525 65847623 ~ 65849441 (+) True G535150

Expression Profile