RNA id: TU605379


Basic Information

Item Value
RNA id TU605379
length 1355
lncRNA type intronic
GC content 0.40
exon number 2
gene id G534626
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 64953520 ~ 64954960 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTGTTTTTTTACTTTGAAGCCTCTTttgctttcagaacaattatttttgattgaaaatataaaaaaaatgttgctttcagaacaattatttttgattgaaaatttgcAATGCAGAATTCTTGACGCACAACTGAAGATGCTGACATATCCTGCATGCACGCCCAAAAGCGAGCCACTCAGGCAGAGAATGATGCGTGGAAGAGGGCGAGGAACGAGATGGGAGTAACAAcaatttgttgcaagttggggaggggggctaatagctgaacaatagactattaAACTTTTACTAAATAATTGTCTAATAGCCAAgcaaggtgtaaaaaaataaaaataattatatcacagaccagatttgccctaatgaCCAAGGGGGAGTTTgggcactgattatgcttttggttCCCAATgcactactgtgtctctaactgacaatgaatgggcaatATAAACCAAATaataaactgataattgtgcacgagTTCAAGTGAAACGAGCAGGGAGCAGGGTTCGAACTCTAAACCTTCTTGCCCGAAGTCCAGCCCGCTATCGACTGCACCAAAAGCATGCTCAAGCCGCAGTGTCGATAGAGCGCGTCCTCGcggtagcttgctactcaatgtaataaagtgaatacttttcaaataaatgaccttacacgttatgttcgctgacaatttgttagctacgctgtccttacaaaccacatagcatagcattacagcagtatctaccggtatgttagctatctACATAACCTTAGTAGTTATAAATCAAaaccaaagtttatttgtcacgtgcgccgaatacaacaggtgtaggtagaccttacagtaaaatgcttacttacaggctctaaccaatagtgcaaaaaaagttattaggtgaacaataggtaagtaaagaaataaaacaacagtaaaaagacaggctatatacagtagcgaggctataaaagtagcaaggctatatacagacaccggttagtcaggctgattgaggtagtatgtacatgtagacctggttaaagtgactatgcatatatgatgaacagagtgtagcagtagcgtaaaagaggggttggtgggtggcgggacacgttgcagatagcctggttagccaatgtgcgggagcactggttggtcttcccaattgaggtagtatgtacatgaatgtacagtcgtggccataagttttgagaatgacacaaatattaattttcacaaagtctgctgcctcagtttgtatgatggcaatttgcatatactccagaatgttatgaagagtgatcagatgaatttcaattaattgcagtccctctttgccatgcaaatgaacggAATCCCCAAATCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU605343 lncRNA downstream 58421 64855495 ~ 64895099 (-) False G534603
TU605354 lncRNA downstream 72916 64876906 ~ 64880604 (-) True G534612
TU605290 lncRNA downstream 111738 64795566 ~ 64841782 (-) True G534559
TU605263 lncRNA downstream 143932 64768414 ~ 64809588 (-) True G534537
TU605154 lncRNA downstream 185520 64767543 ~ 64768000 (-) True G534440
TU605408 lncRNA upstream 22867 64977827 ~ 64978126 (-) True G534651
TU605409 lncRNA upstream 23178 64978138 ~ 64978443 (-) True G534652
TU606260 lncRNA upstream 25050 64980010 ~ 64980314 (-) True G535431
TU606365 lncRNA upstream 184949 65139909 ~ 65141886 (-) True G535528
TU606374 lncRNA upstream 204240 65159200 ~ 65161324 (-) False G535535
XM_036981829.1 mRNA downstream 54972 64897435 ~ 64898548 (-) True LOC118965085
XM_021607226.2 mRNA downstream 238406 64697204 ~ 64715114 (-) True LOC110526341
XM_021607225.2 mRNA downstream 238408 64697204 ~ 64715112 (-) False LOC110526341
XM_036980691.1 mRNA downstream 310886 64509743 ~ 64642634 (-) False LOC110526338
XM_036980692.1 mRNA downstream 310886 64509743 ~ 64642634 (-) True LOC110526338
XR_002473933.2 mRNA upstream 3255 64958215 ~ 64973767 (-) False LOC110526350
XM_021607246.2 mRNA upstream 8873 64963833 ~ 64973601 (-) False LOC110526350
XM_021607245.2 mRNA upstream 8873 64963833 ~ 64973767 (-) True LOC110526350
XM_021607248.2 mRNA upstream 158318 65113278 ~ 65131447 (-) False LOC110526352
XM_021607249.2 mRNA upstream 158318 65113278 ~ 65131447 (-) False LOC110526352
TU605344 other downstream 67988 64855495 ~ 64885532 (-) True G534603
TU605061 other downstream 338724 64578798 ~ 64614796 (-) True G534349
TU604906 other downstream 453906 64498453 ~ 64499614 (-) True G534201
TU604146 other downstream 1127995 63823899 ~ 63825525 (-) False igdcc3
TU603463 other downstream 1963242 62985529 ~ 62990278 (-) False LOC110526310
TU606664 other upstream 669029 65623989 ~ 65625972 (-) True LOC110526365
TU607101 other upstream 1307526 66262486 ~ 66276289 (-) True G536183
TU607202 other upstream 1322242 66277202 ~ 66281619 (-) False LOC110526379
TU607649 other upstream 1545428 66500388 ~ 66505025 (-) True LOC110526387
TU607613 other upstream 1594407 66549367 ~ 66549974 (-) True G536630

Expression Profile