RNA id: TU605235


Basic Information

Item Value
RNA id TU605235
length 1804
lncRNA type antisense_over
GC content 0.42
exon number 1
gene id G534510
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 64962439 ~ 64964242 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaaatcaatttagcctcaaataaataatgaaacatgttcaatttgttttaaataatgcaaaaacaaagtgttggagaagaaagtaaaagtgcaatatgtgccatgtaagaaagctatatgaaagctggtggttccttttaacatgagtcttcaatattcccaggtaagaagttttaggttgtagttattataggaattataggactatttctctctataccatttgtatttcatatacctttgactattggatgttcttataggcactttagtattgccagtgtaacagtatagcttcagtccctctcctcgcccctacctgggctcgaacattgaacacaacgacaacagccaccctcgaagcagcgttacccatgcagagcaaggggaacaaccactccaagtctcagagcaagtgacgtttgaaacgctattagctcgcaccccgctaactagctagccatttcacatcagttacaccagcctaatctcgggagttgataggcttgaagtcataaactgcgcagtgcttgcgaagagctgctggcaaaacgcacgaaagtgctgtttgaatgaatgtttacgagcctgctgctgcctaccatcgctcagtcagactgctctatcaaatcatagacttagttataacatgataacacacagaaatacgagccttaggtcattaatatggctgaatccggaaactatcatctcgaaaacaaaatgtttattctttcagtgaaatacggaacagttctgtattttatctaacgggtgacatccataagtctaaatattcctgttacattgcacaaccttcaatgtttgtcataattacgtaaaattctggcaaattaggcagcccaaactgttgcatatacactgactctgcgtgcaatgaacgcaagagaagtgacacaatttcacctggttaatattgcctgctaacctggatttcttttagctaaatatgcaggtttaaaaatatatacttctgtgtattgattttaagaaaggcattgatgtttatggttaggtacacattggagcaacgatacgcatcgattatatgcaatgcaggacacactagataaactagtaatatcatcaaccatgtgtagttaactagtgattatgattgattgattgttttttataagataagtttaatgctagctagcaacttacctcggcttgctgcattcgcgtaacaggcagtctcctcgtggaatgtaatcaggtggttagagcgttggactagttaactgtaacgctgcaagattgaatccccaaaaaaatttgtcgttctgcccctgaacgaggcagttaacccactgttcctaggccttcattgaaaataagaatgtgttcttaactgactttgtacatttgtacatttattttaaaaataaaattggccaaatcggtgtccaaaaatacagatttctgattgttatgaaaacttgaaatgtgccctaattaaatcggccattccgattaatcggtcgacctctaaacaACACATTCCCCAACTCTTCCACAACCCACCTCCCACCCACATGTGTACCGTGTGTAGTGAGTTGACCTGTCTCCCTCTGGCTGTTTGTGTTGATGAGCTTTAGCTCCTCAGTCCTGGAGCACTTTCTTCAGCTCcccttccacctcctccaccaagGCAGGGAAGCTGGGGTCCAAGAGACACAGGCGGAGGAAGGGCTCCAGCTCCCCACAGAACAGAGCACTGTGGCACCAGGGGCAAGGACACCAGGGGCAAGGACAGACCATGCTCGCCCAGGAAGTGCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU605234 lncRNA upstream 4670 64956530 ~ 64957769 (+) True G534509
TU605167 lncRNA upstream 157576 64785620 ~ 64804863 (+) True G534449
TU605156 lncRNA upstream 184257 64777381 ~ 64778182 (+) True LOC110526344
TU605161 lncRNA upstream 188425 64773647 ~ 64774014 (+) True G534445
TU604826 lncRNA upstream 196761 64765499 ~ 64765678 (+) True LOC110526343
TU605255 lncRNA downstream 60 64964302 ~ 64964542 (+) True G534530
TU605257 lncRNA downstream 3555 64967797 ~ 64968004 (+) True G534532
TU605426 lncRNA downstream 101138 65065380 ~ 65161330 (+) False LOC110526356
TU605410 lncRNA downstream 149038 65113280 ~ 65169563 (+) False G534653
TU605416 lncRNA downstream 149038 65113280 ~ 65133846 (+) False G534653
XR_002473931.2 mRNA upstream 292 64899801 ~ 64962147 (+) False LOC110526349
XR_002473932.2 mRNA upstream 292 64899801 ~ 64962147 (+) False LOC110526349
XR_005052194.1 mRNA upstream 292 64899801 ~ 64962147 (+) False LOC110526349
XR_005052195.1 mRNA upstream 292 64899801 ~ 64962147 (+) False LOC110526349
XM_021607243.2 mRNA upstream 292 64899802 ~ 64962147 (+) False LOC110526349
XM_021607251.2 mRNA downstream 138982 65103224 ~ 65106320 (+) False LOC110526353
XM_021607252.2 mRNA downstream 138984 65103226 ~ 65106320 (+) True LOC110526353
XM_021607253.2 mRNA downstream 142467 65106709 ~ 65113071 (+) True dhdh.2
XR_005052196.1 mRNA downstream 175638 65139880 ~ 65161328 (+) False LOC110526356
XM_036980698.1 mRNA downstream 175639 65139881 ~ 65161328 (+) False LOC110526356
TU605171 other upstream 115335 64790322 ~ 64847104 (+) True G534453
TU605157 other upstream 186103 64769147 ~ 64776336 (+) False LOC110526344
TU603025 other upstream 1618684 63308533 ~ 63343755 (+) True G532489
TU603064 other upstream 1622941 63338236 ~ 63339498 (+) False LOC100750227
TU602734 other upstream 1763705 63032931 ~ 63198734 (+) False G532237
TU605418 other downstream 149038 65113280 ~ 65117956 (+) True G534653
TU605427 other downstream 192267 65156509 ~ 65161330 (+) True LOC110526356
TU605959 other downstream 883381 65847623 ~ 65849441 (+) True G535150
TU607370 other downstream 1638543 66602785 ~ 66604053 (+) True G536406
TU608020 other downstream 2048978 67013220 ~ 67018653 (+) True G536995

Expression Profile