RNA id: TU605418


Basic Information

Item Value
RNA id TU605418
length 3067
RNA type TUCP
GC content 0.50
exon number 2
gene id G534653
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 65113280 ~ 65169563 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTGCTCATCTCTTTTAATGATTGAAATCCAGTAGTAAAGGACAACTCATTACACCAGTTAACATTGTGTTACACCCTACCCTCACAATCAAAGAAGCAGTTGGACATTTAGACACATACACACTAGGTCACCGACAGACAGGAGCAAGAGGAAAGAAGAGGTTGAGGGGGAGGGGTCCAACTCATTCCTTTATCCCCCCCCTCCCACAGTGCCCTCTGAAAAACCCTCAAAGTACTGAATTCATACATCATTCATTTGAGAGAACCATGTAGCagcttacatacatacatacatacagtggttCTTAAGTGCCAACTTAGTTATGACCAAAATGTAAGGGCTTTCTAAGAATAATTCAACACAAAAAAAGTAACCTGTCAAACTATTATAGGACTTCTATGGTTAGACAAAATATATAGTATTGGATGCCCAGAATCTAAATTCACCTTTCACAAAAGTCAAGTATAATACAGAATGTAACATTGTCTACAGTAGATTGGGAGTGCAGAGAAAGTATACAGAACACAATGCAAATACAGACAGCACAACAAGGGGCTATGTTTGGGGGAAGAGTTTAACTGTGACAGGGCCTTAAAGAAGAGCTGTTCGTCGGGTTGCCACCATTTTGTTCGTGTTATAGGAATTggagtgtgtgtttttatttttacaagtTACAGTATAGCAGGCTCTCTTAAGGTGTGCCCCGCCTGCCTCTCAAAACAGAGGTGCCTGGGACGCGCAGACCGACAGGCTAGGTTGTAGCTCTTTCAGTCTGGTTTGAATGTAAGAATCATACATGGTTTTGTTTGTGTGAATAAATACAGCTGTTTCTGGTGGGCGCGTACAGATACCCTGGAGACTGGGGGCGAACAGAGCACACCTATGTGAGGGGAACCCTGGGGTGGACTGTAGTGGGGAGATTTCCTATTGGTCGAGTCACCACCACTGGCCTATTCTTGGGGAGGAAGAAAAGGCCAGGTGTTTGTTGTGGGCTGTACAAGTCTGTCTGAGCCCTGGTGTTGGGACAGGGAGCGGTGAGCAGAGGGACAAGGAGGGCAAGACAGTGGAGGGGTGAGAAGGGCAAAGGAGGGTAGTCATAATTCAAGGAACCACAACCACACGCATGGTGTTGGTATAGCCAGAGCCTGGGCGCCAACCGGTCAGGACGATCACCACATCTCCCTCCTTGCCCATTTCCATGGCGAAGTTGACCCTGAGGTCGACGTCCTCGGCCCAGACGTCGTGGGCAGGCTTGTTGTAGAGGACGGGGAAGATCCCGCGATACAGGTGGGCCTGGCGGGCGGTCTGGCCGTTACGGGTCACAGCAATGATGGGGGCGCGGGGCCTGTACCTGGAGATCAGGTGGGCTGAcctgcacacaaacacagctcAGATTCTGTCAGCCAAGGACACACCCAAGGCCTGCTGCCATTCCAATTTCAGATACTGGCAATATGGCTTGAACAAAGCCTACAGAAATCTATAAAGGGGATAGATTTCTGAAACttttaattaaaatgtatttctgaAATATTAGGAAACTAATGATTTGATTAGTATAGGACCTACTCTTtagtaaaataaatgtttgcGTAAACCTATAGtgtgcattgatgtcaatgggagctAATTTGAATTACATGCCAAGTCCAAGGATGTGTCTCATTGTGAACATTAAACAAGCCACAGTTAACATTTCATCCTGTTGGTTCTGTTGGGGTTACaaagacagtcactctagattgTTTGACCAAAGTCCGCACATTGACAGTTAAAAATATTAGGAAAATGTCAAGGTTGAGCAGTCAAAAGGGTCGGTTGATGTGAGGGTGAACACAATTTAATGACTCCTGCAGTGTTTTGTCAATACAGCCACAGAAATCTCTACCCTGAAACTGTATGGCGCTACCAATGTAGGTGTTCCCAATAATGTTGAGGACTCTTAAAATGAATAATACACATTTTCTtcttgtatttattattatctacaGATCTGTCTCTACAGAGTGGCCTCTGTCTGTACAACCCATAATACTCCCCACCCACCCTTCTACAGCTCACgttactgtctccacccacacagaggGGTGACGTCTATCTGGGACCATGCAACCGTTCCCCACCAATCTAAAGTAGGGGAATAGGATGTTAAGGGTCAGAGTTGCATGTTCTGTAAGTCCCTGACCTGCTGCtgcctgtcccctctcctccctgccttcctcctccctgccgctgcctgtccctctcctccctgccgctgcctgtccctctcctccctgccgctgcctgtccctctcctccctgccgctgcctgtccctctcctccctgccgctgcctgtccctctcctccctgccgctgcctgtccctctcctccctgccgcTGCCTGTCCCTCTTACCTGCCGGTCTTTGTGAGTACGACGAGGGCACTAGCACAGCACTTGAATGAGGACTCCACTGCGCCACAGGCCACGGCCTCAGAGGGGTCCCGGGTCAGGTGGGTGGTGCGCCGCAGCTCCTCAAACAGCTGTCTGTGAAAGGTGGCTGCCTCAGCCTCCCGAGCAATCTGAGTATGAGGGTGGGCCCGAGGCACGGGGGTTACACTCAGTCACACCACCAAGAGGCATGCCTCGCACCTGAGAGGCATGGCAAACGCTTATCCAGTCCTGGTCCAGTTCATTTGAGTTAGGTGGATGTAACAgctgtcaagcagaggcactacCAGATATGTACCCCCATTCTTATAATGGAGTCAACTTTTAGTGTTCTCCAGTTTGTTGTGACTGTAAAGACCTGTAAACGTGTGCCATGCCCTTTCATtcagtccctgtctctccctactCTGGCTTCTCACAAACCTCCTGAGTCCCCCTCCCGAACAGCTGTGCTACAGCCACCTGCCTACCTTCCAGAGTTAGTGAGCACAATGAACGCAGAGGACAAGATCTTAAAGGAGGCCTCCACAGCGCCGATGGCGATAGCCTCGGCCGGGTCGGTAGAGTGTGGTGCGGCGCGCCGCAGGTCCTCGAACACCTGCCGATGAAACATGGCTGCCTCTGCCTCGCG

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU605257 lncRNA upstream 145276 64967797 ~ 64968004 (+) True G534532
TU605255 lncRNA upstream 148738 64964302 ~ 64964542 (+) True G534530
TU605235 lncRNA upstream 149038 64962439 ~ 64964242 (+) True G534510
TU605234 lncRNA upstream 155511 64956530 ~ 64957769 (+) True G534509
TU605167 lncRNA upstream 308417 64785620 ~ 64804863 (+) True G534449
TU605537 lncRNA downstream 55519 65173475 ~ 65173701 (+) True G534764
TU605540 lncRNA downstream 61507 65179463 ~ 65179673 (+) True G534767
TU605541 lncRNA downstream 62327 65180283 ~ 65180487 (+) True G534768
TU605542 lncRNA downstream 62555 65180511 ~ 65180847 (+) True G534769
TU605543 lncRNA downstream 65059 65183015 ~ 65183379 (+) True G534770
XM_021607253.2 mRNA upstream 209 65106709 ~ 65113071 (+) True dhdh.2
XM_021607251.2 mRNA upstream 6960 65103224 ~ 65106320 (+) False LOC110526353
XM_021607252.2 mRNA upstream 6960 65103226 ~ 65106320 (+) True LOC110526353
XR_002473931.2 mRNA upstream 151133 64899801 ~ 64962147 (+) False LOC110526349
XR_002473932.2 mRNA upstream 151133 64899801 ~ 64962147 (+) False LOC110526349
XR_005052196.1 mRNA downstream 21924 65139880 ~ 65161328 (+) False LOC110526356
XM_036980698.1 mRNA downstream 21925 65139881 ~ 65161328 (+) False LOC110526356
XM_036980699.1 mRNA downstream 21925 65139881 ~ 65161328 (+) False LOC110526356
XM_036980697.1 mRNA downstream 21925 65139881 ~ 65178884 (+) False LOC110526356
XM_036980696.1 mRNA downstream 21926 65139882 ~ 65161328 (+) False LOC110526356
TU605171 other upstream 266176 64790322 ~ 64847104 (+) True G534453
TU605157 other upstream 336944 64769147 ~ 64776336 (+) False LOC110526344
TU603025 other upstream 1769525 63308533 ~ 63343755 (+) True G532489
TU603064 other upstream 1773782 63338236 ~ 63339498 (+) False LOC100750227
TU602734 other upstream 1914546 63032931 ~ 63198734 (+) False G532237
TU605427 other downstream 38553 65156509 ~ 65161330 (+) True LOC110526356
TU605959 other downstream 729667 65847623 ~ 65849441 (+) True G535150
TU607370 other downstream 1484829 66602785 ~ 66604053 (+) True G536406
TU608020 other downstream 1895264 67013220 ~ 67018653 (+) True G536995
TU608058 other downstream 1986350 67104306 ~ 67104862 (+) False G537029

Expression Profile