RNA id: TU606378


Basic Information

Item Value
RNA id TU606378
length 2043
lncRNA type antisense_over
GC content 0.45
exon number 3
gene id G535535
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 65159200 ~ 65161324 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATTGTGCAAAATCTTTATTCATTCCTTTCATCATATCTTTCCATCGTCGTCACCATCATGAACACACCACTGACAGAGAGGGACAAGAACAGATAGGGATCTGAATACAGTCACTCTTAATGGGGGGACAATAGGTATCAGCTGTCAACGAGCCCTACACACCGCAGCCAGAAGGAGCACTGGATGGTGAAGGCTGGGTAAGGTGTTTCCCCCAGTCTtttcatctctacaaacaataaTTGACATGTGCAGATAGAGCCATTTCTCTCCCAACAGTACATTTCTTCTTCTCTGGTCCATATTCACATTTACAATGTTCAACACCAACGCCACTATGCATGTATGTCCGAGTGAAGACATTTTACCATTAGGGACATTTAGTTATTTTGTTCACTTTTACTCCAAATATAAATCTTTCGGTGGTTCCCTGTCTTTCTACACACTAGACAGGTAGACCTTGagacaggctgagagagagagagagagagagagagagagagagagagagagagagagagaacatacatTTTATCTGGGCTAAGCAAATGTTGAATGAGTGCAATGTCCAGTATAATGTACTATAGTACAGAAAATACAAATAACCCACACATACATACAACTAATTGATAAACAGAGTAAATTATACACAGGGTTGCCGTTCCCCAAGGTAAACCATAAATATGTAAGTAAAGCACTTGAACAACATCCAGTGTCCTGTGGGTAGGGCCATAGCCATATAATATCTTCATGTATTATATCTCTCAGAGTAGGGAGGGATAGCGGGCTGTAGGGCATGGATTCACCTGGGGTCACTGCCCTAGTCTCTCAGAGTGGGATGGACTGTACTTTATGGAGCAAGTCACAAGTCAGTGCGACAGTGCTATGGGTTTTGCATCATGCTCTCTCAAATTCAGCAGTCTAGAGGGCACCAGTATTCTCTCTGTCATAATTTTGACTCTCCGGTCTAATTTCCCTAAATGAAACATCAGGAGAAGACAAGAAAGCCTTTAGTCTACAGAGGGAGCAGGCTgtggctgtgtctgtctgtgactagTCTCTCCTGACAGACTGGTAACAACATTAACTAGTGATGGATTTGTCCTGTGTAACATACAATCATTTTACTCAACCAGAGGACTTCAGGTCCCTCTGTCTGTGCTATCTGGAGACAAACTGACCCACTACATGACGAGGCACGGTAGAACACTGCTTTGACCCGGGAGATAATTGCATCTTGGCCCGTCAATTTATGTCATTAGTCAAAGAATAGGAAATAAACGGATCACTGAGAAAATGCCtacaacacaataaaataacacatttctaCATGCATGTAGATCCATGATTCAACACCCACAGGGGGGTGTAATAAACTAAACATgactccttcttcttcttcttctagaTATCCACAATGAGAACTGATGAATATAGATACACAGTCCAAAGGATTCTCACATTTGCAGCTGATAAAAGAGAGTGGATGAGACTTGACAGTGGCTCAGGAGGAAATGAGAGACCAGGGGCTgaaagggaagtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgcgtgtgtgtgtgctcttgcgCTTCAGCTCAGAGTGTGTGTGGCAAACCAGTCCGGCTAAGGTTTCCTTCATTCATCCCTGTGTTTTCCAGCTCTATCTAGCCCACAGGTGTGGCTCACCGGAGCACAGAGTAGGAACTGTTACACATGCTAGCCAGACACAGGGAGAACGGAAAGCAGAGGAATAAAAAGTGAGGGGAAAAAAGGGAAAGGGATTGTAGATATGAGGCGTAAAGATCCTCAACCTCCCTCATCTGGTCTGAGTTTGTGTTTCCCAaatgtctgtctgtatttatgtCTATAGTTCTGTCTGTCGGTCTATCTGCAGTACAGACCTGTTCCTCCAAGGGCCACCGGGGAGCCTCCATTAGCTGGAGTAGATCTGGGTGCCGATCACACGCATTATCTCCTTCTGCACCTTGGGCTCCTGGGTGTTGATGTTGGCATCTCCCACCTGGCCATCCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU606365 lncRNA downstream 17314 65139909 ~ 65141886 (-) True G535528
TU606260 lncRNA downstream 178886 64980010 ~ 64980314 (-) True G535431
TU605409 lncRNA downstream 180757 64978138 ~ 64978443 (-) True G534652
TU605408 lncRNA downstream 181074 64977827 ~ 64978126 (-) True G534651
TU605379 lncRNA downstream 204240 64953520 ~ 64954960 (-) True G534626
TU606389 lncRNA upstream 21948 65183272 ~ 65183574 (-) True G535545
TU606390 lncRNA upstream 23219 65184543 ~ 65185214 (-) True G535546
TU606444 lncRNA upstream 128801 65290125 ~ 65337622 (-) True G535600
TU606463 lncRNA upstream 144075 65305399 ~ 65307541 (-) True G535619
TU606447 lncRNA upstream 199681 65361005 ~ 65368565 (-) True G535603
XM_036980695.1 mRNA downstream 25375 65113278 ~ 65133825 (-) True LOC110526352
XM_021607250.2 mRNA downstream 25428 65113278 ~ 65133772 (-) False LOC110526352
XM_021607248.2 mRNA downstream 27753 65113278 ~ 65131447 (-) False LOC110526352
XM_021607249.2 mRNA downstream 27753 65113278 ~ 65131447 (-) False LOC110526352
XM_021607245.2 mRNA downstream 185433 64963833 ~ 64973767 (-) True LOC110526350
XM_021607266.2 mRNA upstream 364348 65525672 ~ 65546447 (-) False LOC110526361
XR_002473936.2 mRNA upstream 365237 65526561 ~ 65546448 (-) True LOC110526361
XM_036980721.1 mRNA upstream 438773 65600097 ~ 65765381 (-) False LOC110526365
XM_036980720.1 mRNA upstream 438773 65600097 ~ 65765382 (-) False LOC110526365
XM_036980722.1 mRNA upstream 438773 65600097 ~ 65765382 (-) False LOC110526365
TU605344 other downstream 273668 64855495 ~ 64885532 (-) True G534603
TU605061 other downstream 544404 64578798 ~ 64614796 (-) True G534349
TU604906 other downstream 659586 64498453 ~ 64499614 (-) True G534201
TU604146 other downstream 1333675 63823899 ~ 63825525 (-) False igdcc3
TU603463 other downstream 2168922 62985529 ~ 62990278 (-) False LOC110526310
TU606664 other upstream 462665 65623989 ~ 65625972 (-) True LOC110526365
TU607101 other upstream 1101162 66262486 ~ 66276289 (-) True G536183
TU607202 other upstream 1115878 66277202 ~ 66281619 (-) False LOC110526379
TU607649 other upstream 1339064 66500388 ~ 66505025 (-) True LOC110526387
TU607613 other upstream 1388043 66549367 ~ 66549974 (-) True G536630

Expression Profile