RNA id: TU605537


Basic Information

Item Value
RNA id TU605537
length 227
lncRNA type intronic
GC content 0.36
exon number 1
gene id G534764
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 65173475 ~ 65173701 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGATTGTATCAACTCGCcacccaaggcttttacttgccacatatagttaaatgcactaaagaggaacaatgtGTACATATTGAAGATGCACATGCTCACCCCCAGAATCTTTTCACATGTCTATTTTCCaaggataaagctaagaacattaacaacttcatagttaagaacactataatGATATGGAAGAAAATTAAACATTTCacaagaaccaatatcactcccT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU605410 lncRNA upstream 3912 65113280 ~ 65169563 (+) False G534653
TU605426 lncRNA upstream 12145 65065380 ~ 65161330 (+) False LOC110526356
TU605416 lncRNA upstream 39629 65113280 ~ 65133846 (+) False G534653
TU605257 lncRNA upstream 205471 64967797 ~ 64968004 (+) True G534532
TU605255 lncRNA upstream 208933 64964302 ~ 64964542 (+) True G534530
TU605540 lncRNA downstream 5762 65179463 ~ 65179673 (+) True G534767
TU605541 lncRNA downstream 6582 65180283 ~ 65180487 (+) True G534768
TU605542 lncRNA downstream 6810 65180511 ~ 65180847 (+) True G534769
TU605543 lncRNA downstream 9314 65183015 ~ 65183379 (+) True G534770
TU605544 lncRNA downstream 11065 65184766 ~ 65184976 (+) True G534771
XR_005052196.1 mRNA upstream 12147 65139880 ~ 65161328 (+) False LOC110526356
XM_036980698.1 mRNA upstream 12147 65139881 ~ 65161328 (+) False LOC110526356
XM_036980699.1 mRNA upstream 12147 65139881 ~ 65161328 (+) False LOC110526356
XM_036980696.1 mRNA upstream 12147 65139882 ~ 65161328 (+) False LOC110526356
XM_021607253.2 mRNA upstream 60404 65106709 ~ 65113071 (+) True dhdh.2
XM_036980700.1 mRNA downstream 19958 65193659 ~ 65368577 (+) False LOC110526357
XM_036980701.1 mRNA downstream 19958 65193659 ~ 65368577 (+) False LOC110526357
XM_036980702.1 mRNA downstream 19958 65193659 ~ 65368577 (+) False LOC110526357
XM_036980703.1 mRNA downstream 19958 65193659 ~ 65368577 (+) False LOC110526357
XM_036980704.1 mRNA downstream 19958 65193659 ~ 65368577 (+) False LOC110526357
TU605427 other upstream 12145 65156509 ~ 65161330 (+) True LOC110526356
TU605418 other upstream 55519 65113280 ~ 65117956 (+) True G534653
TU605171 other upstream 326371 64790322 ~ 64847104 (+) True G534453
TU605157 other upstream 397139 64769147 ~ 64776336 (+) False LOC110526344
TU603025 other upstream 1829720 63308533 ~ 63343755 (+) True G532489
TU605959 other downstream 673922 65847623 ~ 65849441 (+) True G535150
TU607370 other downstream 1429084 66602785 ~ 66604053 (+) True G536406
TU608020 other downstream 1839519 67013220 ~ 67018653 (+) True G536995
TU608058 other downstream 1930605 67104306 ~ 67104862 (+) False G537029
TU608055 other downstream 1930710 67104411 ~ 67104862 (+) False G537029

Expression Profile