RNA id: TU605542


Basic Information

Item Value
RNA id TU605542
length 337
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G534769
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 65180511 ~ 65180847 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GATGACAAAAGGAAAGCTTACAGATGAACGGGATTAAGCTCCTCAAAACGtcagttgttttgttgtttgttatagAAATAAGTATTATTGCATGGTAATTCAATTCTGCCGTGGATTACCAATTCCTCATTCCTCATTAGCTGGTGTAATTTCCCTCTGAGCAAAGTCTTTAGCCCACATACAAACAGACAAATGCACATAATCTCAGGCAcgtgcgctcacacacacacaagccagtGAAATGCATAGTGTCAGACGTCCcagagcacacagacagtgtgacagtgtgtggcTGACTCTGAGGCCCCAATACTCATCAATCATGTCTAATTCCCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU605541 lncRNA upstream 24 65180283 ~ 65180487 (+) True G534768
TU605540 lncRNA upstream 838 65179463 ~ 65179673 (+) True G534767
TU605537 lncRNA upstream 6810 65173475 ~ 65173701 (+) True G534764
TU605410 lncRNA upstream 10948 65113280 ~ 65169563 (+) False G534653
TU605426 lncRNA upstream 19181 65065380 ~ 65161330 (+) False LOC110526356
TU605543 lncRNA downstream 2168 65183015 ~ 65183379 (+) True G534770
TU605544 lncRNA downstream 3919 65184766 ~ 65184976 (+) True G534771
TU605577 lncRNA downstream 47257 65228104 ~ 65228825 (+) True G534798
TU605578 lncRNA downstream 48579 65229426 ~ 65230657 (+) True G534799
TU605548 lncRNA downstream 181825 65362672 ~ 65368577 (+) False LOC110526357
XM_036980697.1 mRNA upstream 1627 65139881 ~ 65178884 (+) False LOC110526356
XR_005052196.1 mRNA upstream 19183 65139880 ~ 65161328 (+) False LOC110526356
XM_036980698.1 mRNA upstream 19183 65139881 ~ 65161328 (+) False LOC110526356
XM_036980699.1 mRNA upstream 19183 65139881 ~ 65161328 (+) False LOC110526356
XM_036980696.1 mRNA upstream 19183 65139882 ~ 65161328 (+) False LOC110526356
XM_036980700.1 mRNA downstream 12812 65193659 ~ 65368577 (+) False LOC110526357
XM_036980701.1 mRNA downstream 12812 65193659 ~ 65368577 (+) False LOC110526357
XM_036980702.1 mRNA downstream 12812 65193659 ~ 65368577 (+) False LOC110526357
XM_036980703.1 mRNA downstream 12812 65193659 ~ 65368577 (+) False LOC110526357
XM_036980704.1 mRNA downstream 12812 65193659 ~ 65368577 (+) False LOC110526357
TU605427 other upstream 19181 65156509 ~ 65161330 (+) True LOC110526356
TU605418 other upstream 62555 65113280 ~ 65117956 (+) True G534653
TU605171 other upstream 333407 64790322 ~ 64847104 (+) True G534453
TU605157 other upstream 404175 64769147 ~ 64776336 (+) False LOC110526344
TU603064 other upstream 1841013 63338236 ~ 63339498 (+) False LOC100750227
TU605959 other downstream 666776 65847623 ~ 65849441 (+) True G535150
TU607370 other downstream 1421938 66602785 ~ 66604053 (+) True G536406
TU608020 other downstream 1832373 67013220 ~ 67018653 (+) True G536995
TU608058 other downstream 1923459 67104306 ~ 67104862 (+) False G537029
TU608055 other downstream 1923564 67104411 ~ 67104862 (+) False G537029

Expression Profile