RNA id: TU605543


Basic Information

Item Value
RNA id TU605543
length 365
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G534770
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 65183015 ~ 65183379 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAATAGATCCagagaaaatacaaaaaatggtTTCAAACGAGATGTATTCATGTTTATTTGAGAATGGCATAAATGTGAATAGATCAAATGAGTTTTCATGACTTCCTTTTCGCCTTCATTCTGTGGGTCTATTCTTCACAGGGAATGTCTTCGGTTTTAAATTGTTCTGTGGCTTTTCATTTATTCATTCCCCTACAATTAGTATTCCTCTCCCAACGAAGGCTTTGGGTTATTACAAATAGCAGTGATACAACTGGCTCACAAATGTTCCCTCTCTTTATCAAAGTGTTAAGTacccttcacacacacatgctaatTAATAACGTTGTCCCTGAACAATGAAAAGTCTTTCAGAATAGTGTGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU605542 lncRNA upstream 2168 65180511 ~ 65180847 (+) True G534769
TU605541 lncRNA upstream 2528 65180283 ~ 65180487 (+) True G534768
TU605540 lncRNA upstream 3342 65179463 ~ 65179673 (+) True G534767
TU605537 lncRNA upstream 9314 65173475 ~ 65173701 (+) True G534764
TU605410 lncRNA upstream 13452 65113280 ~ 65169563 (+) False G534653
TU605544 lncRNA downstream 1387 65184766 ~ 65184976 (+) True G534771
TU605577 lncRNA downstream 44725 65228104 ~ 65228825 (+) True G534798
TU605578 lncRNA downstream 46047 65229426 ~ 65230657 (+) True G534799
TU605548 lncRNA downstream 179293 65362672 ~ 65368577 (+) False LOC110526357
TU605551 lncRNA downstream 181643 65365022 ~ 65368577 (+) True LOC110526357
XM_036980697.1 mRNA upstream 4131 65139881 ~ 65178884 (+) False LOC110526356
XR_005052196.1 mRNA upstream 21687 65139880 ~ 65161328 (+) False LOC110526356
XM_036980698.1 mRNA upstream 21687 65139881 ~ 65161328 (+) False LOC110526356
XM_036980699.1 mRNA upstream 21687 65139881 ~ 65161328 (+) False LOC110526356
XM_036980696.1 mRNA upstream 21687 65139882 ~ 65161328 (+) False LOC110526356
XM_036980700.1 mRNA downstream 10280 65193659 ~ 65368577 (+) False LOC110526357
XM_036980701.1 mRNA downstream 10280 65193659 ~ 65368577 (+) False LOC110526357
XM_036980702.1 mRNA downstream 10280 65193659 ~ 65368577 (+) False LOC110526357
XM_036980703.1 mRNA downstream 10280 65193659 ~ 65368577 (+) False LOC110526357
XM_036980704.1 mRNA downstream 10280 65193659 ~ 65368577 (+) False LOC110526357
TU605427 other upstream 21685 65156509 ~ 65161330 (+) True LOC110526356
TU605418 other upstream 65059 65113280 ~ 65117956 (+) True G534653
TU605171 other upstream 335911 64790322 ~ 64847104 (+) True G534453
TU605157 other upstream 406679 64769147 ~ 64776336 (+) False LOC110526344
TU603064 other upstream 1843517 63338236 ~ 63339498 (+) False LOC100750227
TU605959 other downstream 664244 65847623 ~ 65849441 (+) True G535150
TU607370 other downstream 1419406 66602785 ~ 66604053 (+) True G536406
TU608020 other downstream 1829841 67013220 ~ 67018653 (+) True G536995
TU608058 other downstream 1920927 67104306 ~ 67104862 (+) False G537029
TU608055 other downstream 1921032 67104411 ~ 67104862 (+) False G537029

Expression Profile