RNA id: TCONS_00033393


Basic Information

Item Value
RNA id TCONS_00033393
length 864
lncRNA type sense_over
GC content 0.44
exon number 3
gene id XLOC_016718
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 41504477 ~ 41518340 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTATTTAGAATCAGTAAACCCCGTTAGCCAAGTTCAGGGATTATAGATTCTAGTTTTATAGAGATATAGATTTGTTTACCAAAGCCTGCACAACTTTCAAGCTTTTAAACTTTACAAAAAGAATGCAAATGTTACATATCACGCCGAAATTTTCACTGCATGCAAACAACCTTTTTTATTGATGTAAGGTAAGAACCAGGAGTCTTGGGCGCTGGACTTGGAGCTGGAAGACTTGAAGCTCTTGTGTCCTGACGGGAGTGAAGCGAACCTGTTCCAGCATGAGAGCTGCCACCTGGCTGTAGTGCCAACCAATGCCGTGGTAGTGCGTTTGGAGGACAAATGCCGCGTTTACAAGTTCTTGGAACGTGTGCAGAACGCATTTGGTAACACCACTGAAGGATTTTCTCTGTTCAGCTCAGTGAATTATGGGCAGCCTGATGTGCTGTTCAGCGATTCCACCAAAAAGTTGCTCCGCGTCATGGGGACCTACACTTCCTGGCTGGGACCCAGTTATACCACCATACTGAGGGCTTTTGAGTGTGAAGGTTTGTGTTGATCTGATGAGGAAAGGGGAAACTATAGACCTGGCCTCCATCGCTCTCACACAGACCCTAAAGCACTCTGTGTGCAGTGTGTTACTCTCGTATATGGGCTGAACACCACCTCTCGCCTGTGCTTTATAGTACTGCTATTACTCTTCTGTTTTCACAGTCTTTGTATGGCTTCATATATCTCATTTACTTCACTTCTCTGGTCTCTGCCGCTAAAGCCAAGTTCctgtcatgtaaaaaaaaatacaaaataaatgcaaaaagatGGAAACTTCTATGCAGAAAAGCACTGCAGGGGAACACACCACAAACC

Function

GO:

id name namespace
GO:0006883 cellular sodium ion homeostasis biological_process
GO:0006906 vesicle fusion biological_process
GO:0046031 ADP metabolic process biological_process
GO:0006090 pyruvate metabolic process biological_process
GO:0000904 cell morphogenesis involved in differentiation biological_process
GO:0006096 glycolytic process biological_process
GO:0036376 sodium ion export across plasma membrane biological_process
GO:0017156 calcium-ion regulated exocytosis biological_process
GO:0032989 cellular component morphogenesis biological_process
GO:0009135 purine nucleoside diphosphate metabolic process biological_process
GO:0006757 ATP generation from ADP biological_process
GO:0140115 export across plasma membrane biological_process
GO:0061025 membrane fusion biological_process
GO:0042866 pyruvate biosynthetic process biological_process
GO:0030007 cellular potassium ion homeostasis biological_process
GO:0009179 purine ribonucleoside diphosphate metabolic process biological_process
GO:0090174 organelle membrane fusion biological_process
GO:0009185 ribonucleoside diphosphate metabolic process biological_process
GO:0007409 axonogenesis biological_process
GO:0045055 regulated exocytosis biological_process
GO:0030133 transport vesicle cellular_component
GO:0045202 synapse cellular_component
GO:0099503 secretory vesicle cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0070382 exocytic vesicle cellular_component
GO:0005391 sodium molecular_function
GO:0061134 peptidase regulator activity molecular_function
GO:0061135 endopeptidase regulator activity molecular_function
GO:0030414 peptidase inhibitor activity molecular_function
GO:0017075 syntaxin-1 binding molecular_function
GO:0004857 enzyme inhibitor activity molecular_function
GO:0004866 endopeptidase inhibitor activity molecular_function
GO:0000149 SNARE binding molecular_function
GO:0008556 potassium transmembrane transporter activity, phosphorylative mechanism molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033912 lncRNA downstream 56586 41441577 ~ 41447891 (-) True XLOC_016714
TCONS_00033390 lncRNA downstream 56640 41162103 ~ 41447837 (-) False XLOC_016714
TCONS_00032798 lncRNA downstream 56640 41162103 ~ 41447837 (-) False XLOC_016714
TCONS_00033391 lncRNA downstream 56640 41162258 ~ 41447837 (-) False XLOC_016714
TCONS_00033392 lncRNA downstream 56640 41266836 ~ 41447837 (-) False XLOC_016714
TCONS_00033394 lncRNA upstream 239514 41751840 ~ 41772041 (-) False XLOC_016722
TCONS_00033913 lncRNA upstream 239625 41751951 ~ 41771190 (-) True XLOC_016722
TCONS_00032813 lncRNA upstream 460211 41972537 ~ 41983756 (-) True XLOC_016727
TCONS_00032815 lncRNA upstream 515131 42027457 ~ 42030255 (-) False XLOC_016728
TCONS_00033914 lncRNA upstream 515131 42027457 ~ 42030986 (-) False XLOC_016728
TCONS_00032797 mRNA downstream 380464 41123277 ~ 41124013 (-) True XLOC_016713
TCONS_00032796 mRNA downstream 380680 40901997 ~ 41123797 (-) False XLOC_016713
TCONS_00032794 mRNA downstream 614213 40830768 ~ 40890264 (-) False XLOC_016712
TCONS_00032795 mRNA downstream 614473 40832974 ~ 40890004 (-) True XLOC_016712
TCONS_00032792 mRNA downstream 615012 40830768 ~ 40889465 (-) False XLOC_016712
TCONS_00032802 mRNA upstream 33945 41546271 ~ 41562868 (-) True XLOC_016719
TCONS_00032803 mRNA upstream 50747 41563073 ~ 41571454 (-) True XLOC_016720
TCONS_00032804 mRNA upstream 65181 41577507 ~ 41620112 (-) False XLOC_016721
TCONS_00032805 mRNA upstream 68463 41580789 ~ 41620112 (-) False XLOC_016721
TCONS_00032806 mRNA upstream 70519 41582845 ~ 41723165 (-) False XLOC_016721
TCONS_00032800 other downstream 82755 41421606 ~ 41421722 (-) True XLOC_016717
TCONS_00032799 other downstream 292383 41211978 ~ 41212094 (-) True XLOC_016715
TCONS_00032788 other downstream 908983 40595375 ~ 40595494 (-) True XLOC_016708
TCONS_00032787 other downstream 959416 40544946 ~ 40545061 (-) True XLOC_016707
TCONS_00032779 other downstream 1434625 40067808 ~ 40069852 (-) False XLOC_016701
TCONS_00032808 other upstream 104881 41617207 ~ 41620112 (-) True XLOC_016721
TCONS_00032811 other upstream 433649 41945975 ~ 41946896 (-) True XLOC_016725
TCONS_00032833 other upstream 859683 42372009 ~ 42375109 (-) True XLOC_016738
TCONS_00032837 other upstream 891735 42404061 ~ 42415788 (-) True XLOC_016740
TCONS_00032848 other upstream 1160524 42672850 ~ 42704933 (-) True XLOC_016744

Expression Profile

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