RNA id: TU606390


Basic Information

Item Value
RNA id TU606390
length 672
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G535546
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 65184543 ~ 65185214 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctacaagaccctgctaggtaaagtccccccttatctcagctcgctggtcaccatagcatctcccacctgtagcacacgctccagcaggtatatctctctagtcacccccaaaaccaattctttctttggccgcctctctttccagttctctgctgccaatgactggaacgaactacaaaaatctctgaaactggaaacacttatctccctcactagctttaagcaccaactgtcagagcagctcacagattactgcacctgtacatagcccacctataatttagcccaaacaactacctctttcccaactgtatttcattaatttatttattttgctcctttgcaccccattatttttatttctactttgcacattcttccattgcaaaactaccattccagtgttttacttgctatattgtatttaccttgccaccatggccttttttgcctttacctcccttctcacctaatttgctcacattgtatatagacttgtttatactgtattattgactgtatgtttgttttactccatgtgtaactctgtgtcgttgtatctgtcgaactgctttgctttatcttggccaggtcgcaattgtaaatgagaacttgttctcaacttgcctacctggttaaataaaggtaaaataaataaataaataaaatgag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU606389 lncRNA downstream 969 65183272 ~ 65183574 (-) True G535545
TU606374 lncRNA downstream 23219 65159200 ~ 65161324 (-) False G535535
TU606444 lncRNA upstream 104911 65290125 ~ 65337622 (-) True G535600
TU606463 lncRNA upstream 120185 65305399 ~ 65307541 (-) True G535619
TU606447 lncRNA upstream 175791 65361005 ~ 65368565 (-) True G535603
TU606501 lncRNA upstream 187800 65373014 ~ 65373280 (-) True G535653
TU606502 lncRNA upstream 189311 65374525 ~ 65374778 (-) True G535654
XM_036980695.1 mRNA downstream 50718 65113278 ~ 65133825 (-) True LOC110526352
XM_021607250.2 mRNA downstream 50771 65113278 ~ 65133772 (-) False LOC110526352
XM_021607248.2 mRNA downstream 53096 65113278 ~ 65131447 (-) False LOC110526352
XM_021607249.2 mRNA downstream 53096 65113278 ~ 65131447 (-) False LOC110526352
XM_021607245.2 mRNA downstream 210776 64963833 ~ 64973767 (-) True LOC110526350
XM_021607266.2 mRNA upstream 340458 65525672 ~ 65546447 (-) False LOC110526361
XR_002473936.2 mRNA upstream 341347 65526561 ~ 65546448 (-) True LOC110526361
XM_036980721.1 mRNA upstream 414883 65600097 ~ 65765381 (-) False LOC110526365
XM_036980720.1 mRNA upstream 414883 65600097 ~ 65765382 (-) False LOC110526365
XM_036980722.1 mRNA upstream 414883 65600097 ~ 65765382 (-) False LOC110526365
TU605344 other downstream 299011 64855495 ~ 64885532 (-) True G534603
TU605061 other downstream 569747 64578798 ~ 64614796 (-) True G534349
TU604906 other downstream 684929 64498453 ~ 64499614 (-) True G534201
TU604146 other downstream 1359018 63823899 ~ 63825525 (-) False igdcc3
TU603463 other downstream 2194265 62985529 ~ 62990278 (-) False LOC110526310
TU606664 other upstream 438775 65623989 ~ 65625972 (-) True LOC110526365
TU607101 other upstream 1077272 66262486 ~ 66276289 (-) True G536183
TU607202 other upstream 1091988 66277202 ~ 66281619 (-) False LOC110526379
TU607649 other upstream 1315174 66500388 ~ 66505025 (-) True LOC110526387
TU607613 other upstream 1364153 66549367 ~ 66549974 (-) True G536630

Expression Profile