RNA id: TU605544


Basic Information

Item Value
RNA id TU605544
length 211
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G534771
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 65184766 ~ 65184976 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaaaaaggccatggtggcaaggtaaatacaatatagcaagtaaaacactggaatggtagttttgcaatggaagaatgtgcaaagtagaaataaaaataatggggtgcaaaggagcaaaataaataaattaatgaaatacagttgggaaagaggtagttgtttgggctaaattataggtgggctatgtacaggtgcagtaatctgtgagctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU605543 lncRNA upstream 1387 65183015 ~ 65183379 (+) True G534770
TU605542 lncRNA upstream 3919 65180511 ~ 65180847 (+) True G534769
TU605541 lncRNA upstream 4279 65180283 ~ 65180487 (+) True G534768
TU605540 lncRNA upstream 5093 65179463 ~ 65179673 (+) True G534767
TU605537 lncRNA upstream 11065 65173475 ~ 65173701 (+) True G534764
TU605577 lncRNA downstream 43128 65228104 ~ 65228825 (+) True G534798
TU605578 lncRNA downstream 44450 65229426 ~ 65230657 (+) True G534799
TU605548 lncRNA downstream 177696 65362672 ~ 65368577 (+) False LOC110526357
TU605551 lncRNA downstream 180046 65365022 ~ 65368577 (+) True LOC110526357
TU605647 lncRNA downstream 185040 65370016 ~ 65370283 (+) True G534866
XM_036980697.1 mRNA upstream 5882 65139881 ~ 65178884 (+) False LOC110526356
XR_005052196.1 mRNA upstream 23438 65139880 ~ 65161328 (+) False LOC110526356
XM_036980698.1 mRNA upstream 23438 65139881 ~ 65161328 (+) False LOC110526356
XM_036980699.1 mRNA upstream 23438 65139881 ~ 65161328 (+) False LOC110526356
XM_036980696.1 mRNA upstream 23438 65139882 ~ 65161328 (+) False LOC110526356
XM_036980700.1 mRNA downstream 8683 65193659 ~ 65368577 (+) False LOC110526357
XM_036980701.1 mRNA downstream 8683 65193659 ~ 65368577 (+) False LOC110526357
XM_036980702.1 mRNA downstream 8683 65193659 ~ 65368577 (+) False LOC110526357
XM_036980703.1 mRNA downstream 8683 65193659 ~ 65368577 (+) False LOC110526357
XM_036980704.1 mRNA downstream 8683 65193659 ~ 65368577 (+) False LOC110526357
TU605427 other upstream 23436 65156509 ~ 65161330 (+) True LOC110526356
TU605418 other upstream 66810 65113280 ~ 65117956 (+) True G534653
TU605171 other upstream 337662 64790322 ~ 64847104 (+) True G534453
TU605157 other upstream 408430 64769147 ~ 64776336 (+) False LOC110526344
TU603064 other upstream 1845268 63338236 ~ 63339498 (+) False LOC100750227
TU605959 other downstream 662647 65847623 ~ 65849441 (+) True G535150
TU607370 other downstream 1417809 66602785 ~ 66604053 (+) True G536406
TU608020 other downstream 1828244 67013220 ~ 67018653 (+) True G536995
TU608058 other downstream 1919330 67104306 ~ 67104862 (+) False G537029
TU608055 other downstream 1919435 67104411 ~ 67104862 (+) False G537029

Expression Profile