RNA id: TU606447


Basic Information

Item Value
RNA id TU606447
length 7367
lncRNA type antisense_over
GC content 0.43
exon number 3
gene id G535603
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 65361005 ~ 65368565 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGACTGTGCTTTATTTTAGTCTAAGCAGAATATAATGAACTAGAGAACTACAGTTCAGGAGCACTATGGGAGGAACCACCCCGAATTAGGGAAAAACAGACCCGTGCCAACACTAAGTCAAATTACAGTTCTGTTTTGAGAAAATAAAGATAATAAACTGATTTTGTTCAAGTAAAAATGAGAAAGATGTACAATTATATCATTCAACTAAAATATTATAAATAAATGAACTAATAAGTGCCTAAAATAAATTATGATAAATGACATAAAATGACATGTTTTATTTGTCTGACAGAAGTAAAATCAAGTGGATGAAATGCGAGAGAGAAGCTGGGAATGTAATGTCTCATGAAGCAAAGTACAGTGGATGATTTTCACTTTCCTTTATATCTGAATGGTTGCACAAAGGCTCTCATTTCATGTTTTGTTAGGGAAACTCTGCTCTATTGGTTTCATGTGATAAAATTTGGTCCATGTAACCGATGGAAATGTAACTATACTGTATGATCCCGTCCttattggtgtcagaagtgggattgagGCAAAACTGACACAAGGCAATCTTTACAACTGACAgctgcatttcaattaaacagaATCTCATCTCTGCAAGGAAAAACCAGAGCATGTTTATGAACAATGGAAAAGAACTAGCATTGGCATCCCCAGAATACAATGTATGTGCTACGTTTTTGAAGGTAGTACCGTCAGAGAGAATGAATGTGTTTTAAGGCAGACTTCCCTCTTTTGATCAGTTTGGTGTCAAGGCCACAGGGTTGACCTGACTTGACCAAAACAGTGTAGTGGAACGTTCAATCTGTTATTGGCACATTTTCTTCAGTGGTGTTGGAGTCAACCACAGTTATTATATATACAAGATGGACCAGTAATGTTGAAATAGCTCTTCAGAAATGATCTCTGAGAGAAAATTCCCGCATGCAGACAAGATGAAAATAAAAGAGATGTCACTGATTCTTTTTCAAGACATAAAATGAATTCAAGATGAAAGAAATAATCAAACAAAAGAGAAATGTATGGCTGAAAGACAATGGTCATGTTAAATGACAGCTTATTTTTCAAAATTTACATGTAATTCCATATGGGGATTGTGTAGCAAAATGTCCCTTCAACATGTATCTTCAAAGCATATCAGAATAAACCTTGAGACAATGGGTCCATCCCAGCTTCAGCAGAtaacaaaacagaaaacataaGAGAATGTAAAAAAAGAACCATTTTACCAACATGAATATAAAATCCATTTTAACATCAGCGCTTCAATATACAAGAAATAAAAATGTTTTCTCTCTACTGTTTTTGATAAATTATTTCATAGTTTCCTTCTCGTAGTCAGTGAAATATATTAactatttctttcttttttttcaacATGATTTATTGTACGGTCGTCTATAAAGAAGCCTTAACAGAATTAAAAAATAAGCTATGTAATATGTACAGGAGTATCGCAGGCAGCTGTGTACTCTGGCCGTGGAGAGAGCAGAGGCAGGGGCAGGCCACAGAGGCAGGGAGATCTGCAGGGTAGTCATTCATTCTAGTAGCAGTGCATCCGGCTCACCTGGCCcaatcctctctctttctcatcatacacctgtgttctgtgtttggaTCATATGGAAATGTGTTTTCAGCTCCAATCTGGCAAACCCTCACCCTCTTCCGCCCATACCCGTGGAGCTGTGGATTATAGCGGTGACTGGCGGACGCCGCCCCGGTGgcaagctagctagcaacttgcGAACTAATGGCTGCTGTCACTATCACCTGCTCCTCTGCACGGCACGGAgcagactgaggggcaggccttCTCGTCACGTATTTGAGGTCACATCTATCCGTCTAATCAGCTCCAATTGGACTAATCCAATTAGCTAGTGCACAGGCAATCTTTCAACTGTCAGAAATATCATGATGTGTCAGTGTAAACCTAATTAATGGATTGCTCCAGGCTGGAATTGAAGCCCTACTAAATCATCTAGAATCAGATCTCTGCTATCCTCTCCCTGTTATGTTGGGTGGTGTTCAGCTGAGGGTATAGTGCATATTCATTCATGTTTACTCAGTAACCAAAAAGGCCAAAGTGTTAAAAAGTCCCACCCTCTCCAAAGATTTCCTGCACTGCTGTGGATACGTTTTATAGTGACATCAATGTCCACACAGCCAGGCGACTACTATAGACAGACCTCTCTACTGTACAGTTCTTACTTCCTGACTCATTTGTTTCTGTGTTATATTATTTACATGAAGGAATAAAAAATTCTGTCTCCATTTTTTGATTTGAATCTCCAGCTTTGTTGTCAAACATGATCCCACACTTTTCTGTGATTGACTGCTCTTTATGTTGTTTATGATAGGATCAAGGTCTTCCTTTTAGTGTCTTTTAAAATTGCACGTTGACCTGATGGATCCAAGGCATTAATGTTTCAATGACAGACAACACTccccctgactgactgactgacagtgtgATCGTGTCTCTGGCTCCTCCAGCTGCCCTGGCAGAGGTCCAACATGCTCCTCCAGCTCCCACCATACTCTCAGTGCCTCTGGGTGAATACGCAGCTCTTATTCCTCCCCAGCCAGACAAGGCAGGCAGGGCCCATGGGAAGGCAAGGCTCTGAAAGTTTCCACTAATCATGACATCATAGTGCCTGATGCCCTGAGTATTGAGGTGACTTTGTGGAGTTTCAGTTTAGCATCCAGGCCCCCCCAAAACCCACTTCACTTCCCCTCTTAGCAAAAATCCCATTTCCACAGCGAAAATCCCTTTTTGCGTTAGCTAAGCGAGATGACGGAAAAGCTCTCCTTTTCTCCCAAAGCAGCTATTAAATGAGAGCCATTAATTTCTCCCTCCTGTCCAACAGGTTCCTTTAATTATCTCTCCACTTTCAGTCAATTACATTTCACTTCCTTTCCTTGACAATCACTGCTATTTTAGGGTGAGTGTTCTCTACACCCAGGGGCTGGGGTCTGCTAGACATGCTAGGCAGATCTCTCTTCGCCCACTAGGATTGGTTATTCAACCCATCCGCCAGCTTCAGAGCTCAGATGATTGGTTATCTAGCCTCTTAGCCTCTTAGTCAACCTCTTCAGCTCTTAGGACTGGTTATCCTTCCCCTCTGTCAGCCTCGGAGCTCTGAGGTTTCTAACTCCTCATGAGGACAGACTTTATGGAATGCAAACTAGGAAGGCATTATATCTAGAGCCAGTAGAGGAGGCAGAATAACCAGAGGTTAAGAAATGTGAATAACTGCCTCACAGGTGCTAATGTTACATGAGAAGGTCAGGCATTACAGTGACCACATGACCATAAATATGTTTTTGTTATAttatattttacatacagtaccagtcaaaagtttggacacacctactcattcaagggtttttctttatttttactattttctacattgtagaataatagtgaagatataaactatgaattaacacatatagtaaaaataaagaaaggtGTATccgaacttttgactgttactgtatttcCAAACAGACTCATAAAGTGAGTCGAACTAACAATAGCAATAACCTATAATGTCAATCTAAATATTCTCATCTTAACATGAGTGGGTGGCTTTCAGTCCTGCGTAAGGCGAGTCACTCCTAAGTTAACATTCTTGACTAAAGGCCAGACAGGGCCAGAGCTGCGCTAAGATGGGCTGAGATGGGCTGAGCTGGGCTGAGATGGGCTGAGATGGGCTGAGCTGGGCTGAGATGGGCTGAGATGGGCTGAGATGGGCTGAGCTGGGCTGAGATGGGCTGAGATGGGCTGAGCTGGCAGACTTCTGGAGTCAGTAAGAGAAGGAATAAAACCCACTTCTCATTTTCTTTGTTCCAGAGCCTGGCTTCGCTACAGCTATttctgttttcactgcatgtcaCACTAATAACCTTCCTCCCCTGTGTGGAAGAGCAATAAGAGGACCCTGGTTCTAACAGCTCCCTGATTTAACATGGTCTAATCTAGCCTTCCCAAGCACGTTTCTGCAGCTCCCTGGTGCAGCAGAAAGGCTATACGAGCGTAGCACGTTAGCCAAGCAGGGAATATAAGACTGGGCAGGGGATTGGACCTAGGCTGAACCTAACCCTGCTCTAAGTTGACTGTAGGGGTGTGCAGCATATATCTGGTGTAGGAGCCATCAGAGGGCTCGTGGGGAGGCTAATGGGACTAGTCTTGCAGGAGTTGCTTTTGAAGCGGCAGAGAGACAAGCATAGGAGATTTCATCGCTCACGGAACATTAGGTTTCCTATTGATTAATTCAGCATTACGTAAATAAGGAGCACAACATGGCTGCTGTGAAGAACATGCATTGATATTGACCTACTTCACATTAACTCTTGTTGCTTCCTAGTTCCTACATGTTCTGCTGACTTCATAACAACTAAAGGCTGAGTGTTTTTACTGTGTTTTTGAAGGCAAGCTGAGACAACACACGACCAAAGCTGGCACTGTTTTTTTCAACGGGCGTCATTTTGATTCAAAATAACTACTGTGCTTCACCAATATTGTTCCTCCAGTTCTGAACAATATTCTGTGCTTTGCAGGTGTCCCGACTGTAATACTGCCGTGACAAATGCAAAATGTTTAGAGCAGGTTGTTTTGTGGACAATGGCGGCTTCTGAGGCGATTGTTGAGACAATTATGTGCTGAAAGCTGATGTACAATAACATGGGCCACCCGGCAGGCAGCTGCAACGGAGGAACTAAGGGTTTTTCAACGAACTAGTTGGTTGTCTGCTACCCATTTCAACCTGCTATTGTTCAGTAGCTTTTATACCTGGAGAAATATTTCAAACCTAGTCTATTTTGCCTAATTTTCAACATAATCTATACCCACGCCAATCAAATATCCAACATTAATAGCCAGAGTAGCTATGATATGGAGGGTTTTATCCATCTTCCTGGATCCCATCTCCATCATAAATACGGCTGCGGTGATATCGGTGCCAGGTCAGCTGTCGGCATCCTTGCCAGGGAGCCGCTACAAACATAATTCTCTCTAATCTACCTTCTGTCATCACAGAGCATTCAAGGGACCATCCCCACTGTAATTTGGTCCAGGTGATTATGCAGATGACTTTTCACTTGGTTGGTGTTAATGTATAGAGCCTCACTATTACAACGTGATTAGAGGGAAAGGTGAAATAGCATGTCTAATACGGAGGAAGAGATCATCGAAGGCGACTGAAGCCAAACACTGAACTGCAAGTTGGTCTGAAACATTGTTCCAGGGAAACAGCTGAACAGCATAGCCTGGTTGGGGTTCTGGAAGGCATGATGGAACAGAACAGTGTCTATTTATAGCAGAGGAACACAAACACAAAGTCAGAAGCTAACATTCATTACAGTAGTGTGGTATGGTGAAAGCAAGGATACAAATCAAGACAAATCCAAGATCTTTTCGCTCACAGAAAAGAGTGGCATGGTATTGTCTTTAAGCAGCTGGGAGAAAGACAACGAAAGTCATTGTACTGTAGATGTGTCTTGTGtgatgcaggcaggcagggctTTCAGTCAGTGACTTGGAATGCGTCCGCTCTGCTTTGGAGAGCAAGTCCCAGAGGTAAACAGAGACAGACTGGACAGAAGGCAGCAGGTACCTAATACATGCCAAGTGATTCCTTATCAACCCTTCAATCCCATTCCCAAAGAGCTAGGCAGCACAGATACATGGTGTTTGGCAAGGTGGTggtgttgaggggggggggggggggggggttgtggctTTTGATTGCATGGATTTGGTCCCCCGGGGGATAATTCCAAGGAGCATCACTTTGAAGGATAAGAAAAGACAAGGTTGGACATGTTGGTGTGGAGTAGGACTCAGAGATCAGGGTTCGGCTGTTGacttctcccactctcctctcgccttctcttccctgtccagctctgcctccccctctgtATGCCTTCAGTCAGCTCTCAGAgagttgggagggagggagggagggggagagctgGGGGAGAGCTGGTGTTCTACTGAGAGAACTTGAGGAAGTGTGGACAGTGAATGACTTGCAATCTTATCCTTCCTCGAGACTCAACGCAAACATATTGATCTGGTTTTCATATAGCGGGGCCAGCTGCATCCACCACAAAATAAACGGCTCATAGACACTAACTAAAAGCCTGGCAAGTTAAGAGTTCAGAGCTGTGATCTGCTAGGCATGGATTGGCAGGGAGGAGCTGAATGATGGCGGTTGTATGGCTGTAATTCAGACTGTGTTAGGTTAGGTTGAGACGGATAGGTAGGTTTTTCCACAGGCTCATTATATAATATTTGAAAAAAAAAGCAGGTCAGGGAGGGGACATGTTAACAGTGGCATGTACATTATATACGACACAGCTAAATGAGCTCTAAAAGCTTCCACTGTTTGGCCATCCATAAATCTTGTGTGTCTTTCAGAGCAAGTTCTGCTTGTATCTGTTCTGCAGCCGTGGGGGTGAGGCGATGTTTCTCAATCTCACCAGAGCTTCAGAACGGCTTCAGCGGACATAAAtatctctggcctctctctctctctctctctctctctctctctctctctctctctcgttctccctcttgCCTATAAAGTGGTTATTTTTAATGggtctatttttttattttactcaaACACCATGAGAGCCAATTCATTGTTATACTGTTGAGTCCACTCTTTTGGCAGGTTCAGTAGCTATCAACTCAATCATTTTCTTCTCTGCTTGCCTTAATTTTTGTCCATTAGTCCATCTCGTTTGCAGAAGCTTTTCTTTAAGCATTTCTTTAATACGTTTTATAATAGCACACTCCCTGTGTAATAAAAAAGCTCAAAAGAAAAGAACACACCATGTCCGATTTGCTTGGTTTTTACAGTGGATTGTCGCTTGAACACAAAGGCTTGTGGGAAATAAGCCTCTCATATGTGCACCCTGTCCAGCACAGACACTAGGAAGGTCCATCTGTCTTTTCTCTTCTTTTTCCCCCTCTTCTGAAAAACAGTTCCTTTATAGCTGTCAGATAGTGCTGTGAGTGAGTTGCACACCATGAAGAGGGACATATCCAGCGGCCTGACCGTCACATCCAAGAGAGAGACCCCAATGCCCCAAAGCCCACTGGGACGGGACAGACAAAATGAATAATTTTATCTTTTTCATCCCTCCCCTACTTTACAAGTTCAAgtatttttttcttaaaaaaaaaaaaacaacagcaaAAAAGAGCAAATCTACTTTTCTAGTATTCTACATTTTCTAATCTACTAACTGGGGGCAAAACAGCAACCAGAACATAATAATCAGCCCCTTTACTACGTTTCCTTGTCTTTTTTTCAATGTATAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU606444 lncRNA downstream 23383 65290125 ~ 65337622 (-) True G535600
TU606463 lncRNA downstream 53464 65305399 ~ 65307541 (-) True G535619
TU606390 lncRNA downstream 175791 65184543 ~ 65185214 (-) True G535546
TU606389 lncRNA downstream 177431 65183272 ~ 65183574 (-) True G535545
TU606376 lncRNA downstream 199681 65159200 ~ 65161324 (-) False G535535
TU606501 lncRNA upstream 4449 65373014 ~ 65373280 (-) True G535653
TU606502 lncRNA upstream 5960 65374525 ~ 65374778 (-) True G535654
TU606511 lncRNA upstream 23972 65392537 ~ 65392758 (-) True G535663
TU606448 lncRNA upstream 46008 65414573 ~ 65430407 (-) True G535604
TU606532 lncRNA upstream 55389 65423954 ~ 65436830 (-) True G535683
XM_036980695.1 mRNA downstream 227180 65113278 ~ 65133825 (-) True LOC110526352
XM_021607250.2 mRNA downstream 227233 65113278 ~ 65133772 (-) False LOC110526352
XM_021607248.2 mRNA downstream 229558 65113278 ~ 65131447 (-) False LOC110526352
XM_021607249.2 mRNA downstream 229558 65113278 ~ 65131447 (-) False LOC110526352
XM_021607245.2 mRNA downstream 387238 64963833 ~ 64973767 (-) True LOC110526350
XM_021607266.2 mRNA upstream 157107 65525672 ~ 65546447 (-) False LOC110526361
XR_002473936.2 mRNA upstream 157996 65526561 ~ 65546448 (-) True LOC110526361
XM_036980721.1 mRNA upstream 231532 65600097 ~ 65765381 (-) False LOC110526365
XM_036980720.1 mRNA upstream 231532 65600097 ~ 65765382 (-) False LOC110526365
XM_036980722.1 mRNA upstream 231532 65600097 ~ 65765382 (-) False LOC110526365
TU605344 other downstream 475473 64855495 ~ 64885532 (-) True G534603
TU605061 other downstream 746209 64578798 ~ 64614796 (-) True G534349
TU604906 other downstream 861391 64498453 ~ 64499614 (-) True G534201
TU604146 other downstream 1535480 63823899 ~ 63825525 (-) False igdcc3
TU603463 other downstream 2370727 62985529 ~ 62990278 (-) False LOC110526310
TU606664 other upstream 255424 65623989 ~ 65625972 (-) True LOC110526365
TU607101 other upstream 893921 66262486 ~ 66276289 (-) True G536183
TU607202 other upstream 908637 66277202 ~ 66281619 (-) False LOC110526379
TU607649 other upstream 1131823 66500388 ~ 66505025 (-) True LOC110526387
TU607613 other upstream 1180802 66549367 ~ 66549974 (-) True G536630

Expression Profile