RNA id: TU605647


Basic Information

Item Value
RNA id TU605647
length 268
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G534866
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 65370016 ~ 65370283 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagcagtaaaaatacatgttttgtcatacccatggtatacggctttcagccaatcagcattcagagctcaaaccacccagtttaaaataaaaattaaagacTAATTGaagataaaaaatacatttaaaaagctGTTATGGAGGAGATAATAAAAGAGATGGATGTTCTTATGTTTGGTTGTGAACTATTATCAGAAAGGGTCAGATTGTTTCGACAATGTTAATTAGAAATGCCTCCGCATGGGTTATCCTCAATTAAGAGATCCCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU605548 lncRNA upstream 1439 65362672 ~ 65368577 (+) False LOC110526357
TU605551 lncRNA upstream 1439 65365022 ~ 65368577 (+) True LOC110526357
TU605578 lncRNA upstream 139359 65229426 ~ 65230657 (+) True G534799
TU605577 lncRNA upstream 141191 65228104 ~ 65228825 (+) True G534798
TU605544 lncRNA upstream 185040 65184766 ~ 65184976 (+) True G534771
TU605651 lncRNA downstream 5288 65375571 ~ 65376381 (+) False G534870
TU605653 lncRNA downstream 5288 65375571 ~ 65376183 (+) True G534870
TU605681 lncRNA downstream 42089 65412372 ~ 65412985 (+) True G534894
TU605703 lncRNA downstream 70216 65440499 ~ 65440976 (+) False LOC110526360
TU605704 lncRNA downstream 70216 65440499 ~ 65440869 (+) True LOC110526360
XM_036980700.1 mRNA upstream 1439 65193659 ~ 65368577 (+) False LOC110526357
XM_036980701.1 mRNA upstream 1439 65193659 ~ 65368577 (+) False LOC110526357
XM_036980702.1 mRNA upstream 1439 65193659 ~ 65368577 (+) False LOC110526357
XM_036980703.1 mRNA upstream 1439 65193659 ~ 65368577 (+) False LOC110526357
XM_036980704.1 mRNA upstream 1439 65193659 ~ 65368577 (+) False LOC110526357
XM_036980718.1 mRNA downstream 33325 65403608 ~ 65407275 (+) True LOC110526358
XM_021607264.2 mRNA downstream 44006 65414289 ~ 65430400 (+) True LOC110526359
XM_021607265.2 mRNA downstream 64128 65434411 ~ 65440898 (+) False LOC110526360
XM_021607268.2 mRNA downstream 70809 65441092 ~ 65521598 (+) False LOC110526363
XM_021607267.2 mRNA downstream 70813 65441096 ~ 65521598 (+) True LOC110526363
TU605427 other upstream 208686 65156509 ~ 65161330 (+) True LOC110526356
TU605418 other upstream 252060 65113280 ~ 65117956 (+) True G534653
TU605171 other upstream 522912 64790322 ~ 64847104 (+) True G534453
TU605157 other upstream 593680 64769147 ~ 64776336 (+) False LOC110526344
TU603064 other upstream 2030518 63338236 ~ 63339498 (+) False LOC100750227
TU605959 other downstream 477340 65847623 ~ 65849441 (+) True G535150
TU607370 other downstream 1232502 66602785 ~ 66604053 (+) True G536406
TU608020 other downstream 1642937 67013220 ~ 67018653 (+) True G536995
TU608058 other downstream 1734023 67104306 ~ 67104862 (+) False G537029
TU608055 other downstream 1734128 67104411 ~ 67104862 (+) False G537029

Expression Profile