RNA id: TU605681


Basic Information

Item Value
RNA id TU605681
length 614
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G534894
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 65412372 ~ 65412985 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tagctaggctaggagttagggttagagttaaggttagctaacataTTAAGTAGATGCAAAgtaaactcggcaaaaaaagaaacgtcctctcactgtcaactgcgtttattttcaacatgtgtaaatatttgtatgaacataacaagattcaacaactgagacataaactgaacaagttccacagacatatgactaacagaaattgaataatgtgtccctgaacaaaaatcctaagtaacagtcagtatctggtgtggccaccagctgcattaagtactgcagtgcatctcctcctcaaggactgcaccagatttgccagttcttgctgtgagaactgttccactcttccaccaaggcacctgcaagtgggggaaatggccctagccctcaccctccaatccaacaggtcccagacgtgctcaatgggattgagatccgggcttgtcactggccatggcagaacgctgacatccctgtcttgcaggaaatcacgcacagaacgagcagtatggctggtggcattgtcatgctggagggtcatgtcaggatgagcctgcaggaagggtaccacatgagggaggaggatgtcttctctgtaacgcacagcattgaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU605651 lncRNA upstream 35991 65375571 ~ 65376381 (+) False G534870
TU605653 lncRNA upstream 36189 65375571 ~ 65376183 (+) True G534870
TU605647 lncRNA upstream 42089 65370016 ~ 65370283 (+) True G534866
TU605548 lncRNA upstream 43795 65362672 ~ 65368577 (+) False LOC110526357
TU605551 lncRNA upstream 43795 65365022 ~ 65368577 (+) True LOC110526357
TU605703 lncRNA downstream 27514 65440499 ~ 65440976 (+) False LOC110526360
TU605704 lncRNA downstream 27514 65440499 ~ 65440869 (+) True LOC110526360
TU605709 lncRNA downstream 36507 65449492 ~ 65449693 (+) True G534920
TU605710 lncRNA downstream 36790 65449775 ~ 65450022 (+) True G534921
TU605773 lncRNA downstream 171287 65584272 ~ 65584519 (+) True G534982
XM_036980718.1 mRNA upstream 5097 65403608 ~ 65407275 (+) True LOC110526358
XM_036980714.1 mRNA upstream 43795 65193659 ~ 65368577 (+) False LOC110526357
XM_021607264.2 mRNA downstream 1304 65414289 ~ 65430400 (+) True LOC110526359
XM_021607265.2 mRNA downstream 21426 65434411 ~ 65440898 (+) False LOC110526360
XM_021607268.2 mRNA downstream 28107 65441092 ~ 65521598 (+) False LOC110526363
XM_021607267.2 mRNA downstream 28111 65441096 ~ 65521598 (+) True LOC110526363
XM_021607271.2 mRNA downstream 162084 65575069 ~ 65580465 (+) True LOC110526364
TU605427 other upstream 251042 65156509 ~ 65161330 (+) True LOC110526356
TU605418 other upstream 294416 65113280 ~ 65117956 (+) True G534653
TU605171 other upstream 565268 64790322 ~ 64847104 (+) True G534453
TU605157 other upstream 636036 64769147 ~ 64776336 (+) False LOC110526344
TU603064 other upstream 2072874 63338236 ~ 63339498 (+) False LOC100750227
TU605959 other downstream 434638 65847623 ~ 65849441 (+) True G535150
TU607370 other downstream 1189800 66602785 ~ 66604053 (+) True G536406
TU608020 other downstream 1600235 67013220 ~ 67018653 (+) True G536995
TU608058 other downstream 1691321 67104306 ~ 67104862 (+) False G537029
TU608055 other downstream 1691426 67104411 ~ 67104862 (+) False G537029

Expression Profile